Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00516 ATGGTGAAACCGGCCATGACCACCGTTGATTCTTCTTCTTCTTCTTCTTCGTCTTCTCCTGCTGCTTGCTATGACTCATTCTCCACCAACAATTCTAGTGGCTGTAAGGTGTACAAAGGAGTGAGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATAAGGCTTCCAAATAGCCGTGAGAGAATATGGTTGGGGTCTTACGACACGCAGGAGAAGGCAGCAAGAGCCTTTGATGCTGCTCTCTATTGCCTGCGTGGGAAGGGTGCGAGTTTCAACTTCCCTGACACACCTCAGCACATGGAAATGGAGTCGGTGAAGATACCATGTAGCCACCAAGAGGTCCAAGAGGCGGCGGCGAAGTTTGCCAATAAGGTGGAGGTTTTGGCAGAAGAAGAAGAAGATGGAGAAGTAGGAGCTCGAAGTGAGTCCAAGTTTAACGACACCACAGACGCAAACACGACCTTTCCTATATATGATGGTGGCACAAGTAATCATACGCAAGTGGACCAAGACACCATGGATTGGACATTTATGAACATGTTGGATGACTTGAATGTCTCTGATTTTGGCCTCTATTTTGGAGCTGAGAAGGCTGAGTTTTTGTGCCCCACAACACAAACTCCACTACTCTTTCACAATGGAGATGAGATTGAAATTGATGATCATGATCATGATGCTTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTTTGA 717 0.4589 MVKPAMTTVDSSSSSSSSSPAACYDSFSTNNSSGCKVYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGKGASFNFPDTPQHMEMESVKIPCSHQEVQEAAAKFANKVEVLAEEEEDGEVGARSESKFNDTTDANTTFPIYDGGTSNHTQVDQDTMDWTFMNMLDDLNVSDFGLYFGAEKAEFLCPTTQTPLLFHNGDEIEIDDHDHDAFSNHSFLWSWNF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00516 238 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Phco2g00516 238 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Phco2g00516 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 188 - -
Phco2g00516 238 Coils Coil 111 131 - -
Phco2g00516 238 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Phco2g00516 238 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Phco2g00516 238 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Phco2g00516 238 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Phco2g00516 238 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Phco2g00516 238 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Phco2g00516 238 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Phco2g00516 238 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00516 Phco-Chr2 4788816 4789532 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g00516 AP2 2.9e-12 CL0081