Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2223 atgaagaagaacaaAGTTGATGCAAATCCTGGGGAAGTTAATGATGAGATGAAATGGGTTCGTGATTCTTCATTGGATCACAAAGCCAGAGTTCCTCTCCGAGCTTCAACTGGTTCTTGGAAAGCTTCTCTCTTCATTATAGCAATTGAGTTTAGTGAGAGATTGAGCTACTTCGGAATAGCAACTAGCTTGGTCCTGTACCTGACAAAGGTTATTCATCAAGACCTTAAGACAGCAGTTAAGAATGTGAACTATTGGTCCGGCGTCACCACTTTGATGCCAATGTTCGGAGGATTCCTAGCTGATGCTTACTTAGGCCGTTACACCACTGTGATAGCATCATGCATTATTTATCTCATGggtTTGGTTCTGCTTTGTCTGTCATGGTTCTTACCAGGTTTGAAGGCATGTGATCATAATAATACATGCACCGAACCTAGGAAGATTCATGAAGTGGTTTTCTTCCTAGGCATCTATTTAATATCCATAGGAACTGGGGGGCATAAACCTTCCTTGGAGAGTTTTGGGGCTGATCAATTTGATGATAACCATGCTACAGAAAGAAGGCAGAAAATGTCCTTTTTCAACTGGTGGAACAGTGGTTTGTGCAGTGGAATCATTCTCGGAGTGACTGTGATTGTGTATGTACAAGACCGTGTAAATTGGGGGGTTGCTGATATTATCCTCACAGGGGTCATGGCTATCTCATTGCTCATATTTTTGTTAGGAAGATCGTCTTATCGTTACAGGACACCAATTGGGAGTCCCTTGACTCCTATGTTGCAGGTTCTTGTTGCTGCTATTTCCAAAAGAAAGCTTCCATACCCTTCCAATCCAACTCAACTATGTGAACTTTCCAAGTCTGAGGGCAATAGTGAAAGATTTCTGACTCACACCAAGAAACTCAAGTTTCTTGACAAAGCAGCAATTCTTGAAAATGAAGGGAACTTAGCAGAGAAACAGAGTCCATGGAGACTTGCAACCGTAACTAAGGTTGAAGAACTGAAGCTTATCATCAACATGATCCCCATTTGGGTGTTCACTTTACCATTTGGAATCTGTGCTTCACAAACCTCCACTTTCTTCATCAAGCAAGGTGCCATCATGGACAGAAAGATAGGCAACGGGTTTGTGGTTCCTGCATCTTCAATTTTCACACTTGCTGCCATTGGGATGATAATTTCAGTGACAATTTATGACAAGCTCCTTGTGCCAATGCTAAGAAGGCTAACAGGAAATGAAAGAGGAATCAACATCCTCCAAAGGATTGGTATTGGAATGTTTTTCTCAGCTATCACAATGGTAGTAGCAgctttggtagagagaaagaggcTTGAGGCTGTTGAGATGAATGGCCCATTAAAGGGTTCTTTGTCAATGAGTGCCATTTTGGTTGGCCCCACAATTTCTAATCATTGGATTTGGTGA 1428 0.4076 MKKNKVDANPGEVNDEMKWVRDSSLDHKARVPLRASTGSWKASLFIIAIEFSERLSYFGIATSLVLYLTKVIHQDLKTAVKNVNYWSGVTTLMPMFGGFLADAYLGRYTTVIASCIIYLMGLVLLCLSWFLPGLKACDHNNTCTEPRKIHEVVFFLGIYLISIGTGGHKPSLESFGADQFDDNHATERRQKMSFFNWWNSGLCSGIILGVTVIVYVQDRVNWGVADIILTGVMAISLLIFLLGRSSYRYRTPIGSPLTPMLQVLVAAISKRKLPYPSNPTQLCELSKSEGNSERFLTHTKKLKFLDKAAILENEGNLAEKQSPWRLATVTKVEELKLIINMIPIWVFTLPFGICASQTSTFFIKQGAIMDRKIGNGFVVPASSIFTLAAIGMIISVTIYDKLLVPMLRRLTGNERGINILQRIGIGMFFSAITMVVAALVERKRLEAVEMNGPLKGSLSMSAILVGPTISNHWIW 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2223 475 PANTHER PEPTIDE/NITRATE TRANSPORTER PLANT 22 468 - -
Ssu4g2223 475 SUPERFAMILY MFS general substrate transporter 30 440 IPR036259 -
Ssu4g2223 475 Pfam POT family 108 467 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g2223 475 Gene3D MFS general substrate transporter like domains 12 471 IPR036259 -
Ssu4g2223 475 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 22 468 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2223 Ssu-Chr4 52273461 52279406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2223 1 467 Organic Solute Cotransporters AT3G53960 65.180 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2223 - - gmx:100806045 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2223 4 52273461 52279406 Ssu4g2223 4 52273461 52279406 ECH
Ssu3g1240 3 30255987 30262719 Ssu4g2223 4 52273461 52279406 PCT