Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2240 ATGGAGAAGTCAACGGCACCTCACATACTGGTTTTACCCTTTCCAGCAGAAGGCCACATCAAACCCATGTTTAATTTAGCAAAACTTCTTTCCTATAGAGGCAACAGAATCACCTTCGTCAACACACATCACAACCACAATCGCCTCCTCCAATTCACAGACTTAGCATCCTTCCGCACCCAATTCCCCGATTTCCACTTTGCATCCATCACGGATGGCGTGCCCGATGACCAGCCTCCAAACGAGTTTGAAATGATAATCTCTCCAACCAGCAGGTCCAAGGTTGCCAAAGAGTTCCGAGAATTGTTGTCGGGCTTTTTTGTCGAGAATCCTTGTCAGTGGAACCCACCTTCTTGCATAATATCCGATGGGTTGATGTCAACGGTTTCTATGGATGTTGCTCAAGAGTTCGGGGTTCCGTTCATCACTTTCCGAACCTACAGTGCCACTGCCACGTGGGTCTCAATCCACGTAAGCAAAATTATTCAGGAGGGAGTGATGAATCTGCAGAATCCGgAAGATATAGATAAGGTGCTTGCAAGCATCCCAGGATTGGAGAATTTATTAAGAGAGTGTGATCTTccatctattttaaaattgaagccCGAAAGTCTTTACCTTGATTTCTACATCAAAGAAACCTTGACCATGACTCAAGCTTCTAGTCTTATACTGAATACCTTTGACCAGCTAGAAGCCTCCATTATCACTAAGCTCACTACTATATTTCCCAAAGTTTACACCATTGGTCCTCTTCATAGTCTCATTAAGCCTCAACTTACAAACAATAATTCATCAACCCTTCATTTGAGAAAAGAAGATAGAAGTTGCATAACTTGGCTTGACCATCAAAAGGCAAAGTCAGTTTTATATATTAGCTTTGGCACTCTAGTGAAGCTATCACATGAGCAACTATTGGAGTTTTGGCATGGTTTGGTGAGCAGTTTGAAACCTTTCCTGTGGGTTATTCGAAAGGACCTTATCATTGGAGAAGGTAGTTTGGGTCACAATGTGCCCATGGAGCTTGAATTGGGGACTAGAGAGAGGGGGCTCATGGTGGAGTGGGCACCTCAAGAAAAGGTTCTGGCCCACCCTGCAGTGGGTGGGTTTTTGACTCACAGTGGTTGGAATTCCACATTGGAATGTATTACTGAAGGTGTGCCTATGCTTTGTTGGCCATTGATAGCTGACCAGACGATCAATAGTAGGTGTGTGAGTGAGCAATGGGGGATTGGGCTTGATATGAATGGAACTTGTGATAGGTTAATTGTGGAGAAAATGGTGAAGAAGTGTGATGGAGAATCAAATAGGGCTCATAAGCTCTGCAAATGA 1332 0.4324 MEKSTAPHILVLPFPAEGHIKPMFNLAKLLSYRGNRITFVNTHHNHNRLLQFTDLASFRTQFPDFHFASITDGVPDDQPPNEFEMIISPTSRSKVAKEFRELLSGFFVENPCQWNPPSCIISDGLMSTVSMDVAQEFGVPFITFRTYSATATWVSIHVSKIIQEGVMNLQNPEDIDKVLASIPGLENLLRECDLPSILKLKPESLYLDFYIKETLTMTQASSLILNTFDQLEASIITKLTTIFPKVYTIGPLHSLIKPQLTNNNSSTLHLRKEDRSCITWLDHQKAKSVLYISFGTLVKLSHEQLLEFWHGLVSSLKPFLWVIRKDLIIGEGSLGHNVPMELELGTRERGLMVEWAPQEKVLAHPAVGGFLTHSGWNSTLECITEGVPMLCWPLIADQTINSRCVSEQWGIGLDMNGTCDRLIVEKMVKKCDGESNRAHKLCK 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2240 443 CDD GT1_Gtf-like 7 430 IPR002213 GO:0008194
Ssu4g2240 443 Gene3D Glycogen Phosphorylase B; 8 264 - -
Ssu4g2240 443 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 7 435 - -
Ssu4g2240 443 Gene3D Glycogen Phosphorylase B; 272 431 - -
Ssu4g2240 443 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 226 411 IPR002213 GO:0008194
Ssu4g2240 443 PANTHER GLYCOSYLTRANSFERASE 6 433 - -
Ssu4g2240 443 PANTHER GLYCOSYLTRANSFERASE 6 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2240 Ssu-Chr4 53225736 53230519 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2240 1 440 Glycosyltransferase AT1G22400 39.294 8.29e-108 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2240 - - gmx:102661601 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2240 4 53225736 53230519 Ssu4g2240 4 53225736 53230519 ECH