Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01759 ATGGAGAAGTCAACAAGACCTCACATATTGGTTTTACCCTTTCCAGCAGAAGGCCACATCAAACCCATGTTTAACCTAGCCAAACTTCTTTCCCACAGAGGCCACAGAATCACCTTCGTGAACACACATCACAACCACAATCGCCTCCTCCAATTCACGGACTTGCCATCGTTCCACACCCAATTCCCCCATTTCCACTTTGCATCCATCACCGACGGCGTGCCCGTTGACCTTCCTCCGAACGAGTTTGAACTGTTGATCTCTCCGAGCAGCAGGTCCCAGGTTGCCAAAGAGTTCCGAGATCTGTTGTGGGGCTTTGTGGAGAAACCTCGCCGGTGGGACCCACCTTGTTGCATCATTGCCGATGGGATTATGTCAACGGTTTCTATGAACGTTGCTCAAGAGTTGGGGGTTCCCGTGATTACTTTCCGAACCTACAGTGCCACTGCCACCTGGGTCTCGATTCATCTAAGCAAAATTATTCAGGAGGGACTGATGGATCTGCAGCATCCGGAAGATTTAGATAAGGTGCTCACAAGCATCCCCGGATTGGAGAATTCATTAAGAGAATGTGATCTTCCACCAATTTTAAAATTGAAACCTGGTAGTCTTTTCATTGATTTTTATATCAAAGAAACCTTGACCATGACTCAAGCTTCTGGTCTTATACTCAATACCTTTGACCAACTAGAAGCCCCCATTATCACCAAGCTCACTACTATATTTCCCAAAGTATACACTATTGGTCCTCTTCACACTCTCACAAAGACTCAAATCACAAACAATAATTCATCAACCCTTCATTTGAGAAAAGAAGATAGAAGATGCATAACCTGGCTTGATCATCAAAAGGCAAAGTCAGTTTTATATGTTAGCTTTGGCACTTTGGTGAAGCTATCACATGAACAACTATTGGAGTTTTGGCACGGTTTGGTGAACAGTTTGAAGCCTTTCTTGTGGGTTATTCGACATGATCTTATTATTGGAAAAGGTGATTTGGGTAACAATGTTCCTATGGAGCTTGAATTGGGAACTAAAGAGAGGGGCCTCATGGTGGATTGGGCACCTCAAGAAAAGGTTCTGGCTCACCCTTCAGTGGGTGGGTTTTTGACTCATAGTGGTTGGAATTCCACATTGGAATGTATTACTGAAGGTGTGCCTATGCTTTGTTGGCCATTGATAGCTGAACAAACGATTAATAGTAGGTGTGTGAGTGAACAATGGGGGATTGGACTTAATATGAATGGAACGTCTGATAGGTTAATTGTGGAAAAGATGGTGAAGAATTTGATGGAGAATCGAATAAGGTTCGAAAACTCTGCGAATGAGATGTCAAAGAAAGCTCGTGAAAGTGTTCAAGAAACTGGTTCTTCATTTCATAATATGGAGAATTTGATCAAGGACATTAGGTCAATAAAGGTAATGAGATAA 1431 0.4298 MEKSTRPHILVLPFPAEGHIKPMFNLAKLLSHRGHRITFVNTHHNHNRLLQFTDLPSFHTQFPHFHFASITDGVPVDLPPNEFELLISPSSRSQVAKEFRDLLWGFVEKPRRWDPPCCIIADGIMSTVSMNVAQELGVPVITFRTYSATATWVSIHLSKIIQEGLMDLQHPEDLDKVLTSIPGLENSLRECDLPPILKLKPGSLFIDFYIKETLTMTQASGLILNTFDQLEAPIITKLTTIFPKVYTIGPLHTLTKTQITNNNSSTLHLRKEDRRCITWLDHQKAKSVLYVSFGTLVKLSHEQLLEFWHGLVNSLKPFLWVIRHDLIIGKGDLGNNVPMELELGTKERGLMVDWAPQEKVLAHPSVGGFLTHSGWNSTLECITEGVPMLCWPLIAEQTINSRCVSEQWGIGLNMNGTSDRLIVEKMVKNLMENRIRFENSANEMSKKARESVQETGSSFHNMENLIKDIRSIKVMR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01759 476 Coils Coil 427 447 - -
Cca01g01759 476 Gene3D Glycogen Phosphorylase B; 8 456 - -
Cca01g01759 476 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 226 439 IPR002213 GO:0008194
Cca01g01759 476 PANTHER GLYCOSYLTRANSFERASE 6 470 - -
Cca01g01759 476 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 470 - -
Cca01g01759 476 CDD GT1_Gtf-like 7 450 IPR002213 GO:0008194
Cca01g01759 476 Gene3D Glycogen Phosphorylase B; 271 450 - -
Cca01g01759 476 PANTHER GLYCOSYLTRANSFERASE 6 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01759 Cca-Chr1 41208520 41218091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01759 4 469 Glycosyltransferase AT1G22340 39.040 1.13e-108 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01759 - - gmx:102661601 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01759 01 41208520 41218091 Cca01g01759 01 41208520 41218091 ECH