Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2168 . . Adu03g02452 . Aev04g2157 Ahy13g2548 . Aip03g02877 . Amo13g3072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2171 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr5g2836 . . . . Vimu10g00707 . . .
Pvu9g2172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2173 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2174 . . Adu03g02447 Aed4g1121 Aev04g2347 . . . . . . Apr1g2543 Arst3g03272 Bach2g01745 . Bva06g00905 Car01g01448 . . Dod03g1741 . . Gma15g01896 Gma09g00872 Gso15g1651 Gso9g0778 Lal17g1386 . Lal4g1406 Lan15g0252 Lan14g0040 . Lapu9g00261 . . . . . Lja6g1852 . Mepo6g02154 Mesa5g02403 . Mtr2g1879 . Phco7g02514 . . Pste2g00987 . . . Spst9g02666 Ssu1g1772 . . Trre3g03294 . . . Vimu10g00696 . Vivi4g01239 Vra5g0411
Pvu9g2175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2176 . . . . . . . . . . . . . . . . . . . . . . . Gma09g00867 Gso15g1649 Gso9g0776 . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g1771 . . . . . . . . . Vra5g0415
Pvu9g2177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2348 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu9g2168 Chr9 31059532 31064460 +
Adu Adu03g02452 Chr03 70814124 70823369 -
Aev Aev04g2157 Chr04 19769665 19780135 -
Ahy Ahy13g2548 Chr13 83078447 83085293 +
Aip Aip03g02877 Chr03 77039966 77046506 +
Amo Amo13g3072 Chr13 86062454 86068523 -
Pvu Pvu9g2169 Chr9 31086719 31088747 -
Pvu Pvu9g2170 Chr9 31106073 31109228 +
Pvu Pvu9g2171 Chr9 31176334 31177758 +
Tpr Tpr5g2836 Chr5 51529140 51531218 +
Vimu Vimu10g00707 Chr10 6129708 6132489 -
Pvu Pvu9g2172 Chr9 31182438 31182791 +
Pvu Pvu9g2173 Chr9 31189079 31189912 +
Pvu Pvu9g2174 Chr9 31212154 31217674 +
Adu Adu03g02447 Chr03 69656051 69660673 +
Aed Aed4g1121 Chr4 10566977 10572758 -
Aev Aev04g2347 Chr04 22676120 22681019 +
Apr Apr1g2543 Chr1 34966590 34971072 -
Arst Arst3g03272 Chr3 69912965 69917516 +
Bach Bach2g01745 Chr2 25844054 25847664 +
Bva Bva06g00905 Chr06 7791864 7795535 +
Car Car01g01448 Chr01 24108250 24116817 -
Dod Dod03g1741 Chr03 25565300 25569732 -
Gma Gma15g01896 Chr15 24986582 24991964 -
Gma Gma09g00872 Chr09 13044830 13051232 -
Gso Gso15g1651 Chr15 24706964 24712080 -
Gso Gso9g0778 Chr9 12793816 12799640 -
Lal Lal17g1386 Chr17 15284942 15288553 +
Lal Lal4g1406 Chr4 18279050 18282581 +
Lan Lan15g0252 Chr15 2845048 2848828 -
Lan Lan14g0040 Chr14 642323 647678 +
Lapu Lapu9g00261 Chr9 2543379 2550024 +
Lja Lja6g1852 Chr6 45847279 45852492 +
Mepo Mepo6g02154 Chr6 26028211 26034361 -
Mesa Mesa5g02403 Chr5 41853343 41858497 +
Mtr Mtr2g1879 Chr2 23102901 23108957 -
Phco Phco7g02514 Chr7 43949951 43956411 +
Pste Pste2g00987 Chr2 10492852 10498808 +
Spst Spst9g02666 Chr9 60711456 60718257 +
Ssu Ssu1g1772 Chr1 44108914 44122869 -
Trre Trre3g03294 Chr3 41244474 41248419 +
Vimu Vimu10g00696 Chr10 5990222 5994470 -
Vivi Vivi4g01239 Chr4 40184414 40188075 -
Vra Vra5g0411 Chr5 4285795 4290542 +
Pvu Pvu9g2175 Chr9 31240694 31245110 +
Pvu Pvu9g2176 Chr9 31259365 31260282 -
Gma Gma09g00867 Chr09 12997189 12998068 +
Gso Gso15g1649 Chr15 24546082 24546875 +
Gso Gso9g0776 Chr9 12750099 12751306 +
Ssu Ssu1g1771 Chr1 44086402 44086899 +
Vra Vra5g0415 Chr5 4326467 4327318 -
Pvu Pvu9g2177 Chr9 31269193 31269606 -