Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00696 ATGCCATGCTTCACACCACACCCTTCACTTCTCCTCCTTCTCACCCTTCTCCTACCTTTATCGTTCTTCTCTCTCTCCGCCGCAGTTAAAACCTCTGATTTCCATTCCTTGCGTTATCGAGATGGAGTTGAGGGTGGTGGTTGGGGAGAGTTCCCGAAGGTGCTACCGTGGAAAACGAGGAGATCGATGGCCGAAGATGCTCCGAGCAACACGTCTTTGATATTGGCTCAGAGAAGAACTACGAGGAAGGACCCTTCGGACAACTTTAACCGTTACACCGGTGGTTGGAATATCAGCAATCGCCACTACATTGCTTCAGTTGTTTTCACTGCGGTTCCCTTCTTTGTTGTTGCTGCGGTCTGGTTTGTGATTTTTGGACTTAGTTTATCCATAATCTGTTTCTGCTACTGCTGTTGTCCAAGAGAGCCTTACGGTTATTCACGTTTGGCCTATGCTTTATCCTTGATCTTCCTCATCCTCTTCACCGTTGCAGCAATAGTTGGATGTGTCCTTCTTTACACCTCTCAGGGGAAGTTTCACGGGAGCACCATAAACACTCTGGAATATGTGGTGAGTCAGGCAGACTTCACCGCTGAAAACCTCAGGAATGTGTCAGATTATCTTGATGCAGCTAAGAAGATTGGAGTTGATGCCGTTTTTTTGCCTGCTGATGTTCAGAAGCAGATTGACGATATTAAGACTAAGATTAATTCTTCTGCTGTAGAACTTTCCAGCAAGACTAAAGATAATTCAGAGACAATTAGAGATGTCATAGATGCAATGAGACTGGCTCTGGTTATTCTTGCTGCTGTTATGCTCTTTGTTGCATTTGTTGGATTCTTATTATCAATATTTGGTCTGCAAGGTCTTGTATACTTCTTGATCCTCATTGGTTGGATTCTTGTTGCTGGCACATTTATACTTTGTGGTATATTTCTCTTTCTTCACAATGTGGTTGAAGATACATGTGTTGCCATGGATGAGTGGGTGCAGAACCCCACTGCACAGACAGCCTTGGATGAAATTCTTCCGTGTGTAGATAATGCGACTGCCCAGGAAACATTGACAAGGACCAGGGAAGTGACTCATCAGCTTGTTAAATTAGTTGACAACGTTGTTTCCAATATCACAAACAGGAATTTCCCACCTGCTGCTGGACCCTTATATTACAATCAATCAGGCCCCTTGATGCCTCCTCTTTGTAATCCATTTAATGCTGACCTCACTAATCGGTCGTGTGCACCCGGGGAAGTTCCGTTGGACAATGCTGCAGAGGTGTGGAAGAACTATACCTGTGAGGTTTCTTCATCAGGCATTTGCCAGACGCCCGGTCGGATGACGCCGACGATTTACGGGCAAATGGAAGCTGCAGTGAATATAAGCTACGGGTTGTATCACTATGGTCCATTTTTGGTTGATCTGCAAGACTGCACTTTTGTGCGGAAAACATTCACAGACATCAGCAACGATCACTGTCCTGGCCTGCAGACAAATAGTGAATTGATTTATATTGGATTGGTTTTGGTATCTGCTGCTGTAATGCTGTCTTTGATCTTCTGGGTCATCTATGCAAGGGAGCGGCGGCACCGTGTTTATACAAAACAGTTCATTGACGGCTAA 1620 0.4494 MPCFTPHPSLLLLLTLLLPLSFFSLSAAVKTSDFHSLRYRDGVEGGGWGEFPKVLPWKTRRSMAEDAPSNTSLILAQRRTTRKDPSDNFNRYTGGWNISNRHYIASVVFTAVPFFVVAAVWFVIFGLSLSIICFCYCCCPREPYGYSRLAYALSLIFLILFTVAAIVGCVLLYTSQGKFHGSTINTLEYVVSQADFTAENLRNVSDYLDAAKKIGVDAVFLPADVQKQIDDIKTKINSSAVELSSKTKDNSETIRDVIDAMRLALVILAAVMLFVAFVGFLLSIFGLQGLVYFLILIGWILVAGTFILCGIFLFLHNVVEDTCVAMDEWVQNPTAQTALDEILPCVDNATAQETLTRTREVTHQLVKLVDNVVSNITNRNFPPAAGPLYYNQSGPLMPPLCNPFNADLTNRSCAPGEVPLDNAAEVWKNYTCEVSSSGICQTPGRMTPTIYGQMEAAVNISYGLYHYGPFLVDLQDCTFVRKTFTDISNDHCPGLQTNSELIYIGLVLVSAAVMLSLIFWVIYARERRHRVYTKQFIDG 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00696 539 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 67 528 IPR040283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00696 Vimu-Chr10 5990222 5994470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00696 - - gmx:100809927 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00696 10 5990222 5994470 Vimu10g00696 10 5990222 5994470 ECH
Vimu10g00696 10 5990222 5994470 Vimu11g02750 11 47796318 47800826 ECH
Vimu7g01125 7 10957244 10960393 Vimu10g00696 10 5990222 5994470 ECH
Vimu7g01125 7 10957244 10960393 Vimu10g00696 10 5990222 5994470 PCT