Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2175 ATGATCAAAGGTAAAGACTTGTATGAAGTTGTGGCAGCGATTGTGCCCCTCTACGTGGCTTTGTTCTTAGCATATGGCTCTGTCCGTTGGTGGAAGATCTTCACCCCAGAACAGTGTTCTGGTATAAACCGTTTTGTGTCGGTTTTTGCAGTGCCTTTCCTCTTCTTTCATTTCATATCCAACAATAACCCTTACACCATGAACTTCAGGTTCTTAGCCGCGGACTCTCTTCAAAAGGTTCTGATTTTGGTTGCACTTGTTCTGTGGAACACTTTCACCAAGTGGGGTAGCATTAACTTGACAATCACACTGTTCTCACTCTCCACTCTCCCCAACACACTCATCATGGGGGTCCCTCTTCTCAAAGCCATGTATGGAGACTTCACAACCACCCTCATGATTCAAATTGTGGTTTTCCAAATTGTGATTTGGTTCACTCTCTTGCTGTTCATGTTTGAATACAGAGGAGCCAAGCTTCTCATCTCAGAGCAATTTCCTGAGACAGCCGGAGCCATTGCCTCCCTAAGGGTTGATTCAAGTGTGAGCTCTCTAAACGGTAGAGAGCCATTGCATGCTGATGCAGAAATTGGAGAAAACGGAGAACTCCACGTGGTGGTGAGAAGCATGTCACGTTCTATGTCCATAAACAAGCCTTCTGCATTCAACAAGTCATATTCAACACCTATACCGTCTAGTCTCCAAAATGCAGTCATGATAAATCTTATTCTCACCATGGTTTGGAGGAATCTCATAAGAAACCCTAATACCTATGCAAGTATTTTAGGTCTCATTTGGTCTCTCATATTTTTCAGGTGGAACATCAAAATGCCATCCATTATAAAAGGTTCCATTGAAATAATTTCTAATACAGGACTAGGAATTGTCATGTTCAGTCTTGGTTTATTCATGGCATTACAACCGAAGATCATTACTTGTGGAAAAACCCTGACTTTACTTGCATTAGCATTGAAGTTCTTGGTTGGTCCATTTATTATTCTTGCAACCTCCAAAATAGTTGGTATGCATGGAATTCTTTTACGAGTTACAATTGTTCAGGCTGCTCTTCCCCAAGGAATTGTCCCTTTTGTATTTGCAAGAGAATATAATCTCCACGCTGACATACTCAGTACAACGGTCATCTTCGGAATGGTGGTTGTGTTGCCTGTAACAATAATTTACTATGTAATTCTTGGACTTTAA 1200 0.4133 MIKGKDLYEVVAAIVPLYVALFLAYGSVRWWKIFTPEQCSGINRFVSVFAVPFLFFHFISNNNPYTMNFRFLAADSLQKVLILVALVLWNTFTKWGSINLTITLFSLSTLPNTLIMGVPLLKAMYGDFTTTLMIQIVVFQIVIWFTLLLFMFEYRGAKLLISEQFPETAGAIASLRVDSSVSSLNGREPLHADAEIGENGELHVVVRSMSRSMSINKPSAFNKSYSTPIPSSLQNAVMINLILTMVWRNLIRNPNTYASILGLIWSLIFFRWNIKMPSIIKGSIEIISNTGLGIVMFSLGLFMALQPKIITCGKTLTLLALALKFLVGPFIILATSKIVGMHGILLRVTIVQAALPQGIVPFVFAREYNLHADILSTTVIFGMVVVLPVTIIYYVILGL* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2175 399 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 234 399 - -
Pvu9g2175 399 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 216 - -
Pvu9g2175 399 Pfam Membrane transport protein 10 394 IPR004776 GO:0016021|GO:0055085
Pvu9g2175 399 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 216 IPR033526 GO:0010315|GO:0010329
Pvu9g2175 399 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 234 399 IPR033526 GO:0010315|GO:0010329
Pvu9g2175 399 TIGRFAM 2a69: auxin efflux carrier 1 399 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2175 Pvu-Chr9 31240694 31245110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2175 1 378 Organic Solute Cotransporters AT5G16530 42.063 3.15e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2175 K13947 - ncol:116249534 402.905