Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1771 ATGGCTTCCTTAAGCTCCCTAGTGCTGCTCCTTGCAGCTCTGATTCTATCCCCTCAAGGGCTTGCTAACTATGACAAGGCCCCAGTAGAGAACCCACCTGTGTACAAGCCCCCAGTTGAGAAACCTCCCATTTACAAGCCCCCAGTTGAGAAGCCACCTGTGTACAAGCCCCCAGTTGAGAAACCACCTGTGTACAAGCCCCCAGTAGAGAAACCACCAGTAAAGAAACCACCAGTATACAAGCCACCATATGGGAAGCCACCTGTGCATGAGCTTAATTATGAGAAGCCCCCAGTTGAGAAACCACCAGTGTACAAGCCACCTGTTGAGAAGCCACCTGTGTACAAGCCACCAGTAGAGAAACCACCAGTTTACAAGCCACCAGTTGAGAAACCCCCTGTGTACAAGCCACCAGTCGAGAAACCTCCAGTTTACAAGCCACCATACGGGAAGCCACCTTACCCAAAGCACCCTCCAACAGATGACACTCGTTTCTGA 498 0.512 MASLSSLVLLLAALILSPQGLANYDKAPVENPPVYKPPVEKPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVKKPPVYKPPYGKPPVHELNYEKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPYGKPPYPKHPPTDDTRF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1771 165 Pfam Extensin-like protein repeat 102 111 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 52 61 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 112 121 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 122 131 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 67 76 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 42 51 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 132 141 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 32 41 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 62 71 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 77 84 IPR003883 GO:0005199
Ssu1g1771 165 Pfam Extensin-like protein repeat 142 149 IPR003883 GO:0005199
Ssu1g1771 165 MobiDBLite consensus disorder prediction 26 165 - -
Ssu1g1771 165 PANTHER EARLY NODULIN-11 1 156 - -
Ssu1g1771 165 PRINTS Proline rich extensin signature 46 62 - -
Ssu1g1771 165 PRINTS Proline rich extensin signature 102 127 - -
Ssu1g1771 165 PRINTS Proline rich extensin signature 65 82 - -
Ssu1g1771 165 PRINTS Proline rich extensin signature 21 42 - -
Ssu1g1771 165 PANTHER - 1 156 - -
Ssu1g1771 165 MobiDBLite consensus disorder prediction 31 85 - -
Ssu1g1771 165 MobiDBLite consensus disorder prediction 100 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1771 Ssu-Chr1 44086402 44086899 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1771 - K06098 pvu:PHAVU_009G211100g 40.4318