Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0789 ATGTGGTTACTGAAATCAAAATGGAAAAGCTTCTCACTGCAAAGTATCAATACTCAGAATCCAAGACGCCTTCCCTTGGCTCTCTTCTCTACAATGTCACTGGGCCCATCGCCGGTCCTGCAGGAGCTTTGCAATGTTGTTTCAAATGGAGTCGGCAGTTTAGATGATTTGGAAGCAAGTCTTGATCGGCTTGATGCTTCTTTCACGTCATCTCTCATTAGCCAGATTCTTGACACTTGCAAAAACGAGGCACCCACTAGAAGGCTTCTTAGGTTCTTCTTGTGGTCTTCTAAGAAGTTCAATTGTAAATTGGAAGATGATGATTTTAATTATGCAATTCAGGTGTTTGCGGAGAAGAAAGACCTCAAGGCAATTGATATTTTGGTTTCAGATCTCAGTAATGAGGGTAGAGAGATGAAGGCTCAGACTTTTGGTATTGTAGCTGAGACATTGGTCAGTCTGGGGAGAGAAGATGATGCTTTGGGTCTTTTCAAGAACCTGGACAAATTCAAGTGTTCCTATGATAGCGTTACAGTTACTGCAATTGTTAATGCCCTTTGCTCTAAAGGTCATGCCAGAAGAGCAGAAGGAGTTGTGAGACACCATAAGGATAAGATTTTGGGGGTAAAGCCTTGCATTTATAGGAGTCTTTTCTACGGATGGTCTGAGCAGAAGAATGTGAAAGAAGCACGAAGAATTCTCAAAGAGATGAAGTCAGTTGGAATTATGCCAGATTTATTTTGCTATAACACATTCCTTAGATGCCTTTGTGAGCGAAATCTTAAATCTAATCCTTCAGGTCTTGTACCCGAAGCATTAAATGTGATGATGGAGATGAGATCCAATAGGATAACCCCAACCTCAATTAGTTACAACATATTGCTCTCCTGTTTAGGTAGGACTAGAAGAGTTAAGGAATCCTGTCGAATACTTGACTTGATGAAGAGGTTGGGTTGTTCTCCTGATTGGGTCAGCTATTATCTTGTTGCAAGAGTACTATATTTGACAGGGAGATTTGGGAAAGGTAACCAGATAGTAGATGAAATGATTGAAGAGGGATTGGTTCCGGATCGGAAGTTTTATTATGATTTAATTGGTGTTCTCTGTGGGGTTGAGAGGGTGAATTATGCTCTTGAGATGTTCGAGCGAATGAAGAGAAGCTCATTGGGTGGTTATGGACCAGTATATGATGTGCTTATTCCGAAGCTTTGTAGATCAGGTGACTTTGGAAAAGGTAGGGAGCTTTGGGATGAGGCAACCAGGGTGGGTGTTCTGCTGCATTGCTCGAGTGAAGTGTTGGACCCTTCAATCACTAAGGTGTTTAAGCCAGCAAGGAAGGATGAGGAAGTCTGCACCATGTCCAGAACTCTTGTGCAAGAAGCGAAAGCTGTCAGAAATGGAAATAAGAATAAGAAGAATAAAAACAAAAAGAAAAGTGCTGCACCATCTTAA 1452 0.4153 MWLLKSKWKSFSLQSINTQNPRRLPLALFSTMSLGPSPVLQELCNVVSNGVGSLDDLEASLDRLDASFTSSLISQILDTCKNEAPTRRLLRFFLWSSKKFNCKLEDDDFNYAIQVFAEKKDLKAIDILVSDLSNEGREMKAQTFGIVAETLVSLGREDDALGLFKNLDKFKCSYDSVTVTAIVNALCSKGHARRAEGVVRHHKDKILGVKPCIYRSLFYGWSEQKNVKEARRILKEMKSVGIMPDLFCYNTFLRCLCERNLKSNPSGLVPEALNVMMEMRSNRITPTSISYNILLSCLGRTRRVKESCRILDLMKRLGCSPDWVSYYLVARVLYLTGRFGKGNQIVDEMIEEGLVPDRKFYYDLIGVLCGVERVNYALEMFERMKRSSLGGYGPVYDVLIPKLCRSGDFGKGRELWDEATRVGVLLHCSSEVLDPSITKVFKPARKDEEVCTMSRTLVQEAKAVRNGNKNKKNKNKKKSAAPS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0789 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Vvi1g0789 483 Pfam PPR repeat family 286 326 IPR002885 -
Vvi1g0789 483 Pfam PPR repeat 364 387 IPR002885 -
Vvi1g0789 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vvi1g0789 483 FunFam Pentatricopeptide repeat-containing protein At5g14080 209 482 - -
Vvi1g0789 483 NCBIfam pentatricopeptide repeat 289 323 IPR002885 -
Vvi1g0789 483 NCBIfam pentatricopeptide repeat 213 245 IPR002885 -
Vvi1g0789 483 Gene3D Tetratricopeptide repeat domain 220 391 IPR011990 GO:0005515
Vvi1g0789 483 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 44 418 - -
Vvi1g0789 483 MobiDBLite consensus disorder prediction 462 483 - -
Vvi1g0789 483 MobiDBLite consensus disorder prediction 468 483 - -
Vvi1g0789 483 Gene3D Tetratricopeptide repeat domain 51 205 IPR011990 GO:0005515
Vvi1g0789 483 Pfam Pentatricopeptide repeat domain 214 255 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0789 109 450 Glycosyltransferase AT1G05670 22.965 6.90e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0789 - - vvi:100853947 938.332