Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00243 ATGTCTTTCCAATCACACTTCTCTAAGCATAAAATCTTAGCCTCTTACATTTTCCCTGTTGTTCAACACAAGTTCAATTGCCATCGATTTTACTCGTTTCCAACCTCACAAGTTTCTGCCCCAATATTACCTGACATTGTCAATGAGATATCTCGTATTGTCAGCGATCACCGCCACCCTCGCCATGATCTAGAACTCTCTCTCACTCCATTTTCACCACAAATATCCACTGATTTAGTTGAACAGGTTTTGAAAAGGTGCAATCATCTTGGCTTTTCAGCTCACAGATTCTTTCTTTGGGCTAAATCAATTCCGGGTTTTCAGCATAGTGTTGAGAGCTTCCACATTTTGGTAGAAATCTTAGGTAGTTCTAAACAATTTGCTATACTTTGGGATTTTCTTAAAGAAATGAGAGAGTCTTCTAGTTGTAAAATCACTAATGAAATTTTCTGGATCATTTTCACTTCATATAGCCGAGCTGATTTGCCGGATGGTGCAATTCGGTCTTTTGTTAGAATGGATGAATTTGGAATTAAACCAACTATTATTGATTTTGAATCGCTTTTGTACACTCTATGCAAAAAGAAGCATGTCAAGCAGGCTCAACAGTTTTTTGATCAAACTAAGAGTCGTTTCTTGTTAACTGCTAAAACTTATAGCATTCTGATTTGTGGATGGGGTAAAGTTGGTGATTCGGGGAAGGCCCGCGAGCTGTTTGAATCAATGCTTGAGCAAGGATGTCCTGTGGATTTGCTTGCATATAATAGTTTGTTAGAGGCCCTTTGCAAAGTAGGCCATGTCGATGAAGCTATGGACTTTCTTAATAATATGTTGTCGAAGAAAGTTGAGCCAGATGCTTTTACTTACTCAATATTCATCCGTTCATACTGTAAGGCAAATGATATACATTCAGCTTTCAGTGTTCTTGACAAAATGAAAAGATGCAACCTTTTGCCAAATGTATTTACATACAACTGTATTATAAAGCGACTTTGTAAGAATAAAAAGGTGGAAGAAGCATATCAATTGTTGGATGAAATGATTTCTTGTGGATTAAAACCAGACACTTGGAGTTACAATGCAATACAAGCTTACCATTGTGATCATTACGAGGTAAATAGAGCTCTAAAGTTAATATCTAGAATGGAAAAAGATGACTGTCTTCCTGATCGTCATACGTATAACATGGTGCTAAAATTACTGATTATGATAGGAAGGTTTGACAAGGCAACTGAAGTTTGGGAAAACATGGGGGACAAGAAATTTTATCCTTCTGTCTCAACGTATTCCGTCATGATTCATAGTCTTTGTAAGAAGAAGGGAAAGCTAGAGGAGGCATGTAAGTACTTTGAGATTATGGTTGATGAAGGAATACCACCTTATGTTACTACCATTGAAATGCTAAGGAATCGGCTCTTGGGCTTAGGGCTTTTGGATAACATTGATATACTTGCTAATAAGATGAGGCAGAGTACATCATGTTCAATCCAAGAATTGGCAGATATTATGATTGGCGCTAGATCAGCTCGAAAAACTTCGAGGCGTGATCAGTCAGACATAGAAAGTGATTGA 1572 0.3747 MSFQSHFSKHKILASYIFPVVQHKFNCHRFYSFPTSQVSAPILPDIVNEISRIVSDHRHPRHDLELSLTPFSPQISTDLVEQVLKRCNHLGFSAHRFFLWAKSIPGFQHSVESFHILVEILGSSKQFAILWDFLKEMRESSSCKITNEIFWIIFTSYSRADLPDGAIRSFVRMDEFGIKPTIIDFESLLYTLCKKKHVKQAQQFFDQTKSRFLLTAKTYSILICGWGKVGDSGKARELFESMLEQGCPVDLLAYNSLLEALCKVGHVDEAMDFLNNMLSKKVEPDAFTYSIFIRSYCKANDIHSAFSVLDKMKRCNLLPNVFTYNCIIKRLCKNKKVEEAYQLLDEMISCGLKPDTWSYNAIQAYHCDHYEVNRALKLISRMEKDDCLPDRHTYNMVLKLLIMIGRFDKATEVWENMGDKKFYPSVSTYSVMIHSLCKKKGKLEEACKYFEIMVDEGIPPYVTTIEMLRNRLLGLGLLDNIDILANKMRQSTSCSIQELADIMIGARSARKTSRRDQSDIESD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00243 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 460 IPR002885 -
Tsu02g00243 523 Pfam PPR repeat family 319 361 IPR002885 -
Tsu02g00243 523 Pfam PPR repeat family 392 438 IPR002885 -
Tsu02g00243 523 Pfam PPR repeat family 251 298 IPR002885 -
Tsu02g00243 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Tsu02g00243 523 SUPERFAMILY HCP-like 194 460 - -
Tsu02g00243 523 Gene3D Tetratricopeptide repeat domain 71 209 IPR011990 GO:0005515
Tsu02g00243 523 Gene3D Tetratricopeptide repeat domain 210 278 IPR011990 GO:0005515
Tsu02g00243 523 Gene3D Tetratricopeptide repeat domain 279 350 IPR011990 GO:0005515
Tsu02g00243 523 Gene3D Tetratricopeptide repeat domain 362 523 IPR011990 GO:0005515
Tsu02g00243 523 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 1 522 - -
Tsu02g00243 523 TIGRFAM PPR: pentatricopeptide repeat domain 428 460 IPR002885 -
Tsu02g00243 523 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Tsu02g00243 523 TIGRFAM PPR: pentatricopeptide repeat domain 322 356 IPR002885 -
Tsu02g00243 523 TIGRFAM PPR: pentatricopeptide repeat domain 287 321 IPR002885 -
Tsu02g00243 523 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Tsu02g00243 523 TIGRFAM PPR: pentatricopeptide repeat domain 218 250 IPR002885 -
Tsu02g00243 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Tsu02g00243 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Tsu02g00243 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Tsu02g00243 523 Pfam PPR repeat 218 247 IPR002885 -
Tsu02g00243 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Tsu02g00243 523 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 522 - -
Tsu02g00243 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00243 Tsu-Chr2 2067908 2069673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00243 45 488 Glycosyltransferase AT1G05670 23.831 4.46e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00243 - - gmx:100810899 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00243 02 2067908 2069673 Tsu02g00243 02 2067908 2069673 ECH