Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0786 ATGGCTTGGAGCAGCCTGCACACCGATGTGATGCTTGACTTCTTCTCAAGACTGACAGTCAAAGGCCTCCACCGCTGCAGATGTGTGTCTAGGGAATGGTTGAGCGTCATCTCCAATCCCAACCTGCGGACTCTTCATCGGCAGCGCTGGAGGCAACACCCTTTGATGCTTGTCCTAGACAACATTAACTCCACCACGTATGTGATCACTGTGAGTGACATGGGTGGAGCTGTTTTGAACCACTTCATAGTGGATCTTCCGGTAACCTCTTCTTTTGCCATCATTGGATACACTTACTGTGAACTCATTTGCTTTTCTCTCAATCATGACAAACTGTACGTTTGCAACCCAAGCACCCAAGAATTGGCGGAGGTGCCCAGCTCTCCCTACTCATTCCGTTTCTCCGCTTCTCTTCCTCCAATGGGGTTTTTCACTCTGACTAAACAACATCACATCCTAGCAATAGGACGTGTACCTTCCTTGGATCAGTATAAAATTGTACGCCTGTTTATGCGTAATGTTGAAAAAAATGGTGCTTACGATTTTGGCTGTGAAGTCTTCACCATAAGAGATGGGGAGCATGTAGACTCAGGCTCTTGGAAGCTGATAGGAGACTGCCCTTGTTCAGTCTCGCAGACAAGCCACGCTAGCGTAGAAGGAGCCATTTATTGGCCGGTTGCAGACCATGCTCTTCGCAGTCAAAGGAACCACATTCTACGCTTGGATCTGGAAACCGAAATGTTTGAATTCATATCCGGTCCTCAAGATTACCTATATGGTCTTGATCATGAGGATGATGATTTCATATCTTTTTCTTTGCAAGAGTTAAAAGGCTGTGTGTGCTTGGTGAACAGGTATCAGCCTTTCTTCGTCTTGGATGTATGGATGCTGAAGGATCGGGCAAATGGAATTTGGGTTAAAGAGCACCACATCGACCTGCCTCCGCTTGATCATCACTGTATGATTCAGGGCTTCATCCCTAGTAATCATGATGACGGAAATCTATTGATTTTTATGTCGTCCAACCAGACCTACTACTACTACAACATCCAGACCCAGACATTCAGTGTTGCAGACAACCTAAATGCAGAAGGACTCCATTCTTTCTTTGTCTACTATGACAACTTCTTTTCTTTAGGAACCAGATAG 1149 0.456 MAWSSLHTDVMLDFFSRLTVKGLHRCRCVSREWLSVISNPNLRTLHRQRWRQHPLMLVLDNINSTTYVITVSDMGGAVLNHFIVDLPVTSSFAIIGYTYCELICFSLNHDKLYVCNPSTQELAEVPSSPYSFRFSASLPPMGFFTLTKQHHILAIGRVPSLDQYKIVRLFMRNVEKNGAYDFGCEVFTIRDGEHVDSGSWKLIGDCPCSVSQTSHASVEGAIYWPVADHALRSQRNHILRLDLETEMFEFISGPQDYLYGLDHEDDDFISFSLQELKGCVCLVNRYQPFFVLDVWMLKDRANGIWVKEHHIDLPPLDHHCMIQGFIPSNHDDGNLLIFMSSNQTYYYYNIQTQTFSVADNLNAEGLHSFFVYYDNFFSLGTR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0786 382 SUPERFAMILY Galactose oxidase, central domain 102 359 IPR011043 -
Vvi1g0786 382 Pfam F-box domain 3 43 IPR001810 GO:0005515
Vvi1g0786 382 PANTHER BNACNNG10540D PROTEIN 2 355 - -
Vvi1g0786 382 Gene3D - 1 45 - -
Vvi1g0786 382 SUPERFAMILY F-box domain 3 60 IPR036047 GO:0005515
Vvi1g0786 382 NCBIfam F-box protein interaction domain 100 352 IPR017451 -
Vvi1g0786 382 Pfam F-box associated domain 218 321 IPR013187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0786 Vvi-Chr1 7978069 7979217 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0786 - - vvi:104879709 792.727