Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0433 ATGTCTTTCCAATCACACTTCTCTAAGCATAAAATCTTAGCCTCTTACATTTTCCCTCTTGTTCAACACAAGTTCAATAGCCGTCGATTTTACTCTTTTCAAACCCCACAAGTTTCCACGCCAATATTACCTGACATTGTCAATGAGATATCTCGTATTGTCAGTGATCACCGCCACCCTCACCATGATCTAGAACTCTCTCTCACTCCATTTTCACCACAAATATCCACTAATTTAGTTGAACAGGTTTTGAAAAGGTGCAATCATCTTGGCTTCTCAGCTCACAGATTCTTTCTTTGGGCTAAATCAATTCCGGGTTTTCAGCATAGTGTTGAGAGCTTCCACATTTTGGTAGAAATCTTAGGAAGTTCTAAACAATTTGCTATACTTTGGGATTTTCTTATAGAAATGAGAGAGTCTTCTAGTTGTAAAATCACTAATGAAATTTTCAGGATCATTTTCACTTCATATAGCCGAGCTGATTTGCCGGACGGTGCAATTCGGTCTTTTGCTAGAATGGATGAATTTGGAATTAAACCAACTATTATTGATTTTGAATCGCTTTTGTACACTCTATGCAAAAAGAAGCATGTAAAACAGGCTCAACAGTTTTTTGATCAAACTAAGAGTCGTTTCTTGTTAACTGCTAAAACTTACAGCATTCTGATTTGTGGATGGGGTAAAGTTGGTGATTCGGGGAAGGCCCGCGAGCTGTTTGAAGCAATGCTTGAGCAAGAGTGTCCTGTGGATTTGCTTGCATATAATAGTTTGTTAGAGGCCCTTTGCAAAGGAGGCCATGTGGATGAAGCTATGGACTTTCTTAATAATATGTTGTCGAAGAAAGTTAAGCCAGATGCTTTTACTTACTCAATATTCATCCGTTCATACTGTAAGGCAAATGATATACATTCAGCTTTTAGTGTTCTTGACAAAATGAAAAGATGTAACCTTTTGCCAAATGTGTTTACATACAACTGTATTCTAAAGCGACTTTGTAAGAATAAAAAGGTCGAAGAAGCATATCAATTGTTGGATGAAATGATTTCTAGTGGATTAAAACCAGACACTTGGAGTTACAATGCAATACAAGCTTACCATTGTGGTCATTATGAGGTCAATAGAGCTCTAAAGTTAATATCTAGAATGGAAAAAGATGACTGTCTTCCTGATCGTCATACGTATAACATGGTGCTAAGATTACTGCTTCTGATAGGAAGGTTTGACAAGGCAACTGAAGTTTGGGAAAACATGGGTGACAAGAAATTTTATCCTTCTGTCTCAACGTATTCCGTCATGATTCATGGTCTTTGTAAGAAGAAGGGAAAGCTAGAGGAGGCATGTAAGTACTTTGAGACGATGGTTGATGAAGGAATACCACCTTATGTTACTACCATCGAAATGCTAAGGAATCGGCTCTTGGGCTTAGGGCTTTTGGATAACATTAATATACTTGCTAATAAGATGAAGCAGAGTACATCATGTTCAATCAAAGAATTGGCAGATATTATGATTGGCGCTAGATCAGCTCGAAAAACTTCGAGACGTGATGAGTCAGACATAGAAAGCGATTGA 1572 0.3772 MSFQSHFSKHKILASYIFPLVQHKFNSRRFYSFQTPQVSTPILPDIVNEISRIVSDHRHPHHDLELSLTPFSPQISTNLVEQVLKRCNHLGFSAHRFFLWAKSIPGFQHSVESFHILVEILGSSKQFAILWDFLIEMRESSSCKITNEIFRIIFTSYSRADLPDGAIRSFARMDEFGIKPTIIDFESLLYTLCKKKHVKQAQQFFDQTKSRFLLTAKTYSILICGWGKVGDSGKARELFEAMLEQECPVDLLAYNSLLEALCKGGHVDEAMDFLNNMLSKKVKPDAFTYSIFIRSYCKANDIHSAFSVLDKMKRCNLLPNVFTYNCILKRLCKNKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCGHYEVNRALKLISRMEKDDCLPDRHTYNMVLRLLLLIGRFDKATEVWENMGDKKFYPSVSTYSVMIHGLCKKKGKLEEACKYFETMVDEGIPPYVTTIEMLRNRLLGLGLLDNINILANKMKQSTSCSIKELADIMIGARSARKTSRRDESDIESD* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0433 523 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 522 - -
Tpr3g0433 523 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 1 522 - -
Tpr3g0433 523 TIGRFAM PPR: pentatricopeptide repeat domain 218 250 IPR002885 -
Tpr3g0433 523 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Tpr3g0433 523 TIGRFAM PPR: pentatricopeptide repeat domain 428 460 IPR002885 -
Tpr3g0433 523 TIGRFAM PPR: pentatricopeptide repeat domain 287 321 IPR002885 -
Tpr3g0433 523 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Tpr3g0433 523 TIGRFAM PPR: pentatricopeptide repeat domain 322 356 IPR002885 -
Tpr3g0433 523 SUPERFAMILY TPR-like 187 415 IPR011990 GO:0005515
Tpr3g0433 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Tpr3g0433 523 Gene3D Tetratricopeptide repeat domain 71 210 IPR011990 GO:0005515
Tpr3g0433 523 Gene3D Tetratricopeptide repeat domain 280 349 IPR011990 GO:0005515
Tpr3g0433 523 Gene3D Tetratricopeptide repeat domain 211 279 IPR011990 GO:0005515
Tpr3g0433 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Tpr3g0433 523 Gene3D Tetratricopeptide repeat domain 363 523 IPR011990 GO:0005515
Tpr3g0433 523 Pfam PPR repeat 218 246 IPR002885 -
Tpr3g0433 523 Pfam PPR repeat family 392 438 IPR002885 -
Tpr3g0433 523 Pfam PPR repeat family 319 361 IPR002885 -
Tpr3g0433 523 Pfam PPR repeat family 251 298 IPR002885 -
Tpr3g0433 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Tpr3g0433 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Tpr3g0433 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 460 IPR002885 -
Tpr3g0433 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Tpr3g0433 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0433 Tpr-Chr3 4534460 4536807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0433 150 488 Glycosyltransferase AT1G05670 25.588 8.67e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0433 - - gmx:100810899 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0433 3 4534460 4536807 Tpr3g0433 3 4534460 4536807 ECH