Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02853 ATGGCAGATTCTGTTGATTTCACTACTACTCACGATGTTCTCTCCATTCTCTCTTCTCCCGGTACACATTTTCTTCTTAAGAACAACGCCGATCAGGTTGGAATTGATAGTTTGAAGGGGAAGAAAATCGGTTTCTATTTTTCAGCTTCATGGTGTGGTCCGTGTCAAAGATTCACTCCAACATTGGCAGAGGTGTACAATGAAATCTCTCCAAATGGTGACTTTGAGGTTGTTTTTGTCTCGGctgatgaagatgatgaggCCTTTAAGAGTTACTTTTCCAAGATGCCGTGGTTGGCTATACCATTTTCTGATACAGAGACACGTAACAGCCTTGATGAATTGTTTCATGTAAATGGCATTCCTCATCTTGCATTGGTTGATGAAACTGGGAAAGTTGTTACTGAAGATGGAGTTAACATCATCCGTGATTATGGAGCTGAAGGATACCCTTTCACATCGAAAAGGGTCCAAGAGTTGAAAGACCAGGAAGAGGAAGCTAAGAGGAACCAGTCCTTGAGATCTCTATTGGTATCTCGTTCCCGTGACTTTGTGATATCATCCGATGGAACTAAAATACCTATTTCTGAGCTTGAGGGAAAGACAGTTGGTCTGTATTTCTGTGCAACTTCGCACAGACCATGCGTGTTATTTACTCAACAGCTTAAGGACGTTTACAAGAAGCTGAAGGAAAAAGGGGAGAACTTCGAGGTTGTGTTTCTACCCTTAGATGACGAGgaagagtcattgaagaaagaATTAGAAAGTTTGCCTTGGTTATCCTTACCTATCAAGGACAAAACCGTCGGGAAACTGATTCAATACTTTGAGCTATCAGAACTCCCTACCTTAGTTATTATTGGGCCAGATGGGAAAACTCTTCATCCTAATGTTGCTGATACCATTCAGGATCATGGGATTGATGCATATCCGTTCACTCCTGAAAAGTTTGTTGAACTCGATGAAATAACAAAGGCCAAGGAAGCAACTCAAACTCTTGAGTCAGTTTTGGTGTCCGGGGATCAAGACTTTGTCATTAAGAATGGCGGGGAGAAGATTCCAGTGTCTGAATTAGAGGGGAACACCGTCCTACTCTACTTCTCGGCCCACTGGTGTCCTCCATGCCGAGCATTTCTTCCAAAACTCATTGATGCATACAATAAGATTAAGGCACAAGACAAAGAGGCACTTGAAGTCGTTTTCATCTCAAGTGACAGAGATCAAAACTCCTTTGATGAATTCTTTGCAGGAATGCCATGGTTGGCACTTCCCTTTGGTGATTCCAGGAAAGAATTCCTGAGTCGCAAATTCAAGATATCTGGAATCCCCATGCTTGTTGCGATTGGACCAAGTGGTCGGACTGTCACAAAAGAAGCTCGAGGTCTGGTTGGGCTATATGGGGCAGATGCTTATCCTTTCACTGAGGAgagaataaaagaaatagaggcAAAAAATGATGAGATTGCAAAGGGGTGGCCTGAGAAGGTGAAACATGAAACACATGAGCATGAACTTGTATTATCGCGTCGCAGGATTTATTATTGTGATGATTGCAGTGAAGAGGGACATAATTGGTCATACTACTGTGAAGACTGTGACTTTGATCTCCATCCAAATTGTGCATTGGGAGACAAAGGAAGCGTCAATGGTGCCAAGGAAGAGGAGAAGCCCAAAGATGGATGGGTTTGTGATGGAGATGTCTGCACCAAAGCCTGA 1716 0.4161 MADSVDFTTTHDVLSILSSPGTHFLLKNNADQVGIDSLKGKKIGFYFSASWCGPCQRFTPTLAEVYNEISPNGDFEVVFVSADEDDEAFKSYFSKMPWLAIPFSDTETRNSLDELFHVNGIPHLALVDETGKVVTEDGVNIIRDYGAEGYPFTSKRVQELKDQEEEAKRNQSLRSLLVSRSRDFVISSDGTKIPISELEGKTVGLYFCATSHRPCVLFTQQLKDVYKKLKEKGENFEVVFLPLDDEEESLKKELESLPWLSLPIKDKTVGKLIQYFELSELPTLVIIGPDGKTLHPNVADTIQDHGIDAYPFTPEKFVELDEITKAKEATQTLESVLVSGDQDFVIKNGGEKIPVSELEGNTVLLYFSAHWCPPCRAFLPKLIDAYNKIKAQDKEALEVVFISSDRDQNSFDEFFAGMPWLALPFGDSRKEFLSRKFKISGIPMLVAIGPSGRTVTKEARGLVGLYGADAYPFTEERIKEIEAKNDEIAKGWPEKVKHETHEHELVLSRRRIYYCDDCSEEGHNWSYYCEDCDFDLHPNCALGDKGSVNGAKEEEKPKDGWVCDGDVCTKA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02853 571 CDD TryX_like_TryX_NRX 343 473 IPR045870 GO:0004791
Tsu04g02853 571 Pfam Thioredoxin-like 40 133 IPR012336 -
Tsu04g02853 571 Pfam Thioredoxin-like 361 453 IPR012336 -
Tsu04g02853 571 Pfam Thioredoxin-like 200 292 IPR012336 -
Tsu04g02853 571 SUPERFAMILY Thioredoxin-like 348 456 IPR036249 -
Tsu04g02853 571 SUPERFAMILY Cysteine-rich domain 489 544 IPR046349 -
Tsu04g02853 571 ProSiteProfiles Thioredoxin domain profile. 1 162 IPR013766 -
Tsu04g02853 571 SUPERFAMILY Thioredoxin-like 25 134 IPR036249 -
Tsu04g02853 571 ProSiteProfiles Thioredoxin domain profile. 320 483 IPR013766 -
Tsu04g02853 571 CDD TryX_like_TryX_NRX 24 152 IPR045870 GO:0004791
Tsu04g02853 571 PANTHER NUCLEOREDOXIN 1-2-RELATED 8 542 - -
Tsu04g02853 571 Pfam C1 domain 500 541 IPR004146 -
Tsu04g02853 571 ProSitePatterns Thioredoxin family active site. 364 382 IPR017937 -
Tsu04g02853 571 SUPERFAMILY Thioredoxin-like 186 295 IPR036249 -
Tsu04g02853 571 Gene3D Glutaredoxin 176 313 - -
Tsu04g02853 571 Gene3D Glutaredoxin 18 154 - -
Tsu04g02853 571 Gene3D Glutaredoxin 332 474 - -
Tsu04g02853 571 PANTHER THIOREDOXIN 8 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02853 Tsu-Chr4 34440451 34443797 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02853 K17609 - gmx:100809224 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02853 04 34440451 34443797 Tsu04g02853 04 34440451 34443797 ECH