Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3683 ATGGCTTTCCAATCACTTTTCTCTAAGCATAAACTCCTGTCCTCTTACCTTTTCCCTCTTGTTCAACACAAATTCATTCATTCTTTTCCAACCCAACAAATTTCTGTGCCATTATTACCCGAACTTGTCAATGAGATATCGCGTATCGTAAGTGATCACCGCCACCCTCGCCATGACTTAGAACTCTCTCTAACTCCATTTTCAACACAAATATCAACAGATTTAGTTGAACAGGTTTTGAAAAGATGCAATCATCTTGGATTTTCAGCTCACAGATTCTTTCTTTGGGCTAAATCAATTCCGGGTTTTCAGCATAGTGTTCAAAGCTTCCACATTTTGGTAGAAATATTAGGAAGGTCTAAACAATTTGCCATACTTTGGGATTTTCTTATAGAAACGAGGGAGTCTGACTCTAGTTGTAAAATCACTAACGAAATTTTCTGGATCATTTTCACTGCATATAGCCGAGCTGATTTGCCAGACGGTGCAATTCGATCTTTTGTTAGAATGGATGAATTTGGAATCAAGCCGAGTATTATTGATGTTGATCTGCTTTTGTACACTTTGTGTAAAAAGAAACATGTCAGGCAGGCTCAACAATTTTTTGATCAAGTGAAAAGCCATTTCTTGTTAACCACAAAAACTTACAGCATTCTGATTAATGGATGGGGTAAGATTGGTGATTCGGGGAAGGCCCGTGAGCTGTTTGACGCAATGCTTGAGCAAGGATGTCATGTGGATTTACTTGCATATAATAATTTGTTAGAGGCTCTTTGCAAAGGAGGCCATGTGGATGAAGCTATGGATTTTCTTAATGATATGTTGTCAAAGAAAGTTGAGCCGGATGCTTTTACTTACTCAATATTCATTCGTTCTTACTGTGATGCAAATAATGTGCATTCGGCTTTCGGGGTTCTTGACAAAATGAGAAGATGTAACCTTTTGCCAAATGTGTTTACATACAATTGTATTATAAAGCGACTTTGTAAGATTAAAAAGGTGGAAGAAGCATATCAATTGTTGGATGAAATGATTTCTAGTGGATTAAAACCTGACACTTGGAGTTATAATGCAATACAAGCTTACCATTGTGATCATTGTGAGGTAAATAGGGCTCTGAAGTTAATATCTAGAATGGAAAAAGATGTCTGTTTTCCCGATCGCCATACGTATAACATGGTGCTAAAATTACTGATTAGGATAGGAAGGTTTGACAAGGCAACCGAAGTTTGGGAATGCATGGGGGATAAGAAATTTTATCCTTCTGTCTCGACATATTCCGTCATGATTCATGGTCTTTGCAAGAAGAAGGGGAAGCTAGAGGAGGCATGTAAGTACTTTGCGATGATGATTGATGAAGGAATACCACCTTATGACACTACCATCGAAATGCTAAGGAATCGGCTCTTGGGCTTAGGGCTTTTGGATAACATCGAAATACTTGCTGCTAAGATGAGGCAGAGTACATCATGTTCAATCCAAGAATTGGCAAATATTATGATTGGAGCTAGATCTGCTCAAAATACTTGGAGACGTGACGAGTCGGACATAGAAAGTGATTGA 1563 0.3826 MAFQSLFSKHKLLSSYLFPLVQHKFIHSFPTQQISVPLLPELVNEISRIVSDHRHPRHDLELSLTPFSTQISTDLVEQVLKRCNHLGFSAHRFFLWAKSIPGFQHSVQSFHILVEILGRSKQFAILWDFLIETRESDSSCKITNEIFWIIFTAYSRADLPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLTTKTYSILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMVLKLLIRIGRFDKATEVWECMGDKKFYPSVSTYSVMIHGLCKKKGKLEEACKYFAMMIDEGIPPYDTTIEMLRNRLLGLGLLDNIEILAAKMRQSTSCSIQELANIMIGARSAQNTWRRDESDIESD* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3683 520 Pfam PPR repeat family 386 435 IPR002885 -
Mtr8g3683 520 Pfam PPR repeat family 248 294 IPR002885 -
Mtr8g3683 520 Pfam PPR repeat family 316 358 IPR002885 -
Mtr8g3683 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Mtr8g3683 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Mtr8g3683 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Mtr8g3683 520 Gene3D Tetratricopeptide repeat domain 43 207 IPR011990 GO:0005515
Mtr8g3683 520 Gene3D Tetratricopeptide repeat domain 277 347 IPR011990 GO:0005515
Mtr8g3683 520 Gene3D Tetratricopeptide repeat domain 208 276 IPR011990 GO:0005515
Mtr8g3683 520 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 1 518 - -
Mtr8g3683 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Mtr8g3683 520 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Mtr8g3683 520 TIGRFAM PPR: pentatricopeptide repeat domain 425 457 IPR002885 -
Mtr8g3683 520 TIGRFAM PPR: pentatricopeptide repeat domain 215 247 IPR002885 -
Mtr8g3683 520 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Mtr8g3683 520 TIGRFAM PPR: pentatricopeptide repeat domain 319 353 IPR002885 -
Mtr8g3683 520 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Mtr8g3683 520 SUPERFAMILY HCP-like 216 456 - -
Mtr8g3683 520 Pfam PPR repeat 215 244 IPR002885 -
Mtr8g3683 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 457 IPR002885 -
Mtr8g3683 520 Gene3D Tetratricopeptide repeat domain 360 520 IPR011990 GO:0005515
Mtr8g3683 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Mtr8g3683 520 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3683 Mtr-Chr8 47373718 47376023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3683 142 465 Miscellaneous Gene Families AT4G11690 25.153 3.22e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3683 - - gmx:100810899 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3683 8 47373718 47376023 Mtr8g3683 8 47373718 47376023 ECH