Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1427 . . . . Adu05g03567 . . . . . . . Aip09g00077 . . . . . . . Arst5g04575 . Bach1g00170 . . . . . . . . . . . . . . . . . . . Gma16g01433 . . . . . . . . Lal1g0896 Lal2g1026 . . . . . . . . . . . . . . . . . . . . Lja2g2862 . . . . . . . . . . . . Phco5g01098 . . . . . Pste9g00901 . . . . . Pumo6g02269 . Pvu4g0915 . Rops5g01192 . . . Spst4g03455 . . . . Sto8g2320 . . . . . . Vian8g00812 . Vifa1g07860 . Vimu8g00135 . Viun4g01660 . . . . .
Vvi18g1428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01060 . . . . . . . . . . . . . Gma16g01434 . . . . . . . . . . Lal9g0920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1430 . . . . . . . . . . . . Aip09g00079 . . . . . . Apr6g1416 . . . . . . . . . . . . . . . . . . . . . Gma20g01627 . . . . . . . . . . . Lal9g0921 . . . . . . . . . . . . . . . . . . Lja5g0804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1431 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1432 . . . . . . . . Aev09g2073 . Ahy19g2732 . Aip09g03194 . . . . . . Apr6g1418 . . . . . . . . . . . . . . . . . . . . . . Gma16g01435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g2237 . . . . . . . Mtr1g3568 . . . Phco5g01093 . . . Psa6g4297 . Pste9g00903 . Pte16g00428 . . . Pumo6g02272 . Pvu4g0917 . . . . . Spst4g03453 . . . . . Tpr1g0923 . . . Tsu01g04228 . Vian8g00808 . . . Vimu8g00138 . Viun4g01667 . . . . .
Vvi18g1433 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1434 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1426 Chr18 16506973 16507131 -
Vvi Vvi18g1427 Chr18 17294109 17296105 +
Adu Adu05g03567 Chr05 108099170 108101786 +
Aip Aip09g00077 Chr09 630538 633131 -
Arst Arst5g04575 Chr5 106777527 106780208 +
Bach Bach1g00170 Chr1 2114826 2117980 +
Gma Gma16g01433 Chr16 33418812 33423699 -
Lal Lal1g0896 Chr1 6427847 6431449 +
Lal Lal2g1026 Chr2 7019830 7021608 -
Lja Lja2g2862 Chr2 46567104 46572715 +
Phco Phco5g01098 Chr5 40962971 40966379 +
Pste Pste9g00901 Chr9 5216477 5221045 -
Pumo Pumo6g02269 Chr6 43320810 43326282 -
Pvu Pvu4g0915 Chr4 17534818 17538934 -
Rops Rops5g01192 Chr5 25432793 25436604 +
Spst Spst4g03455 Chr4 75080595 75084154 +
Sto Sto8g2320 Chr8 15620545 15623360 +
Vian Vian8g00812 Chr8 17303260 17306896 +
Vifa Vifa1g07860 Chr1 1227104991 1227106592 +
Vimu Vimu8g00135 Chr8 5078048 5082623 -
Viun Viun4g01660 Chr4 30292117 30296536 -
Vvi Vvi18g1428 Chr18 17368191 17396005 +
Vvi Vvi18g1429 Chr18 17398159 17400018 -
Car Car04g01060 Chr04 10770192 10772699 -
Gma Gma16g01434 Chr16 33441160 33443796 -
Lal Lal9g0920 Chr9 6958864 6961305 -
Vvi Vvi18g1430 Chr18 17425052 17427601 -
Aip Aip09g00079 Chr09 645056 647901 -
Apr Apr6g1416 Chr6 22372351 22375658 -
Gma Gma20g01627 Chr20 43364803 43367265 +
Lal Lal9g0921 Chr9 6985803 6988244 +
Lja Lja5g0804 Chr5 7478217 7480723 +
Vvi Vvi18g1431 Chr18 17448944 17452516 -
Vvi Vvi18g1432 Chr18 17494098 17503140 +
Aev Aev09g2073 Chr09 23903907 23905530 +
Ahy Ahy19g2732 Chr19 148713461 148714168 +
Aip Aip09g03194 Chr09 137416639 137418699 +
Apr Apr6g1418 Chr6 22441240 22443541 +
Gma Gma16g01435 Chr16 33448779 33453844 +
Mal Mal1g2237 Chr1 29516618 29516917 -
Mtr Mtr1g3568 Chr1 47404889 47407284 +
Phco Phco5g01093 Chr5 40582581 40584220 -
Psa Psa6g4297 Chr6 380925025 380928197 +
Pste Pste9g00903 Chr9 5293637 5294591 +
Pte Pte16g00428 Chr16 6111225 6113612 +
Pumo Pumo6g02272 Chr6 43451383 43454394 +
Pvu Pvu4g0917 Chr4 17711289 17713898 +
Spst Spst4g03453 Chr4 75030351 75031015 -
Tpr Tpr1g0923 Chr1 7875588 7876522 -
Tsu Tsu01g04228 Chr01 50143124 50145889 +
Vian Vian8g00808 Chr8 17144878 17145198 -
Vimu Vimu8g00138 Chr8 5316023 5316343 +
Viun Viun4g01667 Chr4 30401435 30404004 +
Vvi Vvi18g1433 Chr18 17507707 17510303 +
Vvi Vvi18g1434 Chr18 17510947 17511365 +
Vvi Vvi18g1435 Chr18 17511748 17512556 +