Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1435 ATGGCAGTGCTTTCATATCTGGATTTCTTCTCCACGGGGGTTCAACGAGTGGCCTTGTCTACTGCTGCAGATATGTGCAAGAAACTCCCTTTAGATGCAGCTGAGTTTGTGATGGAAGCTGTCCCTCTGTTGACGAACCTTCTGCAGTATCATGATGCTAAGGTGTTAGAACAAGCTTCTGTTTGCTTGACTCGAATTGCTGAAGCATTTGCTTCATCTCTGGATAAATTGGATGAACTATGCAATCATGGATTAGTTGACCAAGCTGCCTCTCTCATTTTCACCAGTAATTCTGGGGTGGGCAGGCATCCCTTAGCACGCCGACGTACACGGGCTAGCTCCAATTTTCTGGTTAAAGGGACTCTTGTGAAGAAGTCTCCAACTAGCAGTTCTTTGAAACAGGAAGATGTCAATGGAAATGTGCCTGAGGTTTCTGCTCGTGAGAAACTATTAAATGATCAGCTCGAGCTTCTACAGCAATTTGAAATGGACCTTCTTCCTGTTCTAATACAGATCTATGGATCCAGTGTGAATGGCCCTGTTCGCCAAAAAAATGTTTGTCGGTTATTAGAAAATTAA 579 0.4387 MAVLSYLDFFSTGVQRVALSTAADMCKKLPLDAAEFVMEAVPLLTNLLQYHDAKVLEQASVCLTRIAEAFASSLDKLDELCNHGLVDQAASLIFTSNSGVGRHPLARRRTRASSNFLVKGTLVKKSPTSSSLKQEDVNGNVPEVSAREKLLNDQLELLQQFEMDLLPVLIQIYGSSVNGPVRQKNVCRLLEN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1435 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 119 187 IPR045322 GO:0006511|GO:0061630
Vvi18g1435 192 Gene3D - 1 192 IPR011989 -
Vvi18g1435 192 SUPERFAMILY ARM repeat 3 94 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1435 Vvi-Chr18 17511748 17512556 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1435 K10590 - vvi:100264024 182.57