Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1427 ATGGCCTTGCCCATAACAGCCATGAACTGCCTGGTCTACGTCAGAGCTGCTGTGTCGGTTCTCTTCCTGGGAAGGCTCGGAAGACTGGAGCTGGCCGGGGGCGCCCTTTCCATCGGATTCACCAACATCACCGGCTACTCCGTGCTGGTGGGCCTGGCTTCGGGGCTGGAACCAGTGTGCAGCCAGGCCTATGGCAGTAAAAACTGGGAACTGCTGTCGCTGTCGCTGGTGCGGATGGTTCTGATTCTGGGAGTGGCAATCATTCCCATAAGCTTCCTGTGGGTGAATTTGGATAGGGTGATGGTGGCGATGGGGCAGGACAAGGAGATAACGGCAATGGCAGCGAGATATTGTCTGTACTCGCTTCCGGACCTGGCGACGAATACGTTGCTGCAGCCGCTGAGGGTGTACCTGAGGTCGCAAAGGGTGACGAAGCCGATGATGTACTGCTCGCTGGTGGCAGTGGCATTGCACGTGCCGCTGAATGCGGTGATGGTGGAGGTGATGGGGCTGGGGGTGGAGGGGGTGGCGATGGCGTCGGTGGTGACAAACCTGAATATGGTGGTGCTGATGGCGGGGTACGTGTACGTGAGAGGGGGGTGGGAGGTGAAATGGAGGGTTGGGATAGGCGGGGTGTGTGGTGGGGTGGGCCCACTCCTGAAACTGGCAGTGCCCAGCTGTATCGGGATATGTTTGGAGTGGTGGTGGTACGAGATCGTCACCGTCCTTGCTGGGTACTTGCCGAATCCCACACTCGCTGTGGCCGCCACTGGGATTCTCATTCAGACCACTTCCTTCATGTACACTGTCCCCATGGCTCTTGCTGGCTGTGTCTCTGCCAGAGTAGGGAATGAGCTGGGAGGCGGGAAGCCGAACAGGGCGAAGCTGGCAGCCATGGTGGCATTGGGATGCGCGTTCCTGATCGGGATCATCAACGTCATATGGACGGTGATCTTTAGGGAAAAGTGGGCAGGGGTGTTCACAAAGGATGAAATGGTCAAGGCCTTGGTCGCATCAGTCATGCCGCTGATGGGGGTGTGCGAGCTCGGAAACTGCCCCCAGACCACCGGCTGCGGCATCCTGCGCGGCACGGCCAGGCCGGCCGTGGGCGCCCGCATCAACCTGGGCTCCTTTTACTTTGTTGGCACCCCGGTGGCCGTTGGCCTGGCCTTCTGGCTCAAGGTGGGCTTCAGTGGGCTCTGGTATGGGCTCCTCTCAGCCCAGGTGGCCTGCGCCATTTGGATTCTCTACGTCGTCCTGATGCGTACGGACTGGGAAGCCGAGGCTACCAAAGCCAAGAAGCTCACAAGCTTGGAAATGGCCACGTCTTGTGATGGGGTAGTCAGAAATGAGGAACAGGAAGAGGGTGATGATAATGAGAGCAGAGGGTTGTTGCTGAGTGAGGGTGATATCTTGTAG 1419 0.5891 MALPITAMNCLVYVRAAVSVLFLGRLGRLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWELLSLSLVRMVLILGVAIIPISFLWVNLDRVMVAMGQDKEITAMAARYCLYSLPDLATNTLLQPLRVYLRSQRVTKPMMYCSLVAVALHVPLNAVMVEVMGLGVEGVAMASVVTNLNMVVLMAGYVYVRGGWEVKWRVGIGGVCGGVGPLLKLAVPSCIGICLEWWWYEIVTVLAGYLPNPTLAVAATGILIQTTSFMYTVPMALAGCVSARVGNELGGGKPNRAKLAAMVALGCAFLIGIINVIWTVIFREKWAGVFTKDEMVKALVASVMPLMGVCELGNCPQTTGCGILRGTARPAVGARINLGSFYFVGTPVAVGLAFWLKVGFSGLWYGLLSAQVACAIWILYVVLMRTDWEAEATKAKKLTSLEMATSCDGVVRNEEQEEGDDNESRGLLLSEGDIL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1427 472 CDD MATE_eukaryotic 1 431 IPR045069 GO:0042910|GO:1990961
Vvi18g1427 472 MobiDBLite consensus disorder prediction 449 472 - -
Vvi18g1427 472 Pfam MatE 4 163 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g1427 472 Pfam MatE 225 386 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g1427 472 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 425 - -
Vvi18g1427 472 NCBIfam MATE family efflux transporter 4 401 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1427 Vvi-Chr18 17294109 17296105 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1427 K03327 - vvi:100264851 906.746