Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1431 ATGTCTCCAGAAACACCCCCACAAAACCTTCTCTGCATATCATGCTTCATCTATCTCCTCGCCTCTTTTCTTCTTCCATGCAGTTGCAGCACTACCAGTAGTCCCACAGACAGGGGTGATCAAATCAAGGGAATGTTTGTGTTTGGAAGCTCTCTAGTGGACACTGGCAACAACAACTTCCTCCAAACAACAACCAGGGCTGATTTTTTGCCTTACGGAATCGACTTCCCAGGTGGGCCTTCTGGTAGATTCACCAATGGCAAGAACGTTGTTGACCTCATTGGCGACCACCTTCACCTTCCTTCCATTCCTCCTTTTTCCAGTCCTGCAACAAAGGGAGCTGCAATTGTACGTGGGGTAGACTTTGCTTCTGGAGGCTCTGGCATACTCGATACCACTGGCTCCTTTTTGGGTGAAGTGACAAGCCTAAACCAACAAATCAGAAACTTTGAGAAGGTGACACTGCCTGATTTGGAAGCTCAACTGGGGGTGAAGAGCAGCGAATCACTTTCAAGCTACTTGTTTGTCGTGGGAGTTGGGGGAAATGATATCACCTTCAACTACTTTCTGCACGCCATCAACAGCAATATCAGTCTTCAAGCCTTCACTATCACCATGACAACCCTGCTATCTGCTCAACTCAAGAAACTGCACAGTTTGGGAGGTCGGAAGTTTGCTTTGATGTCTGTAAATCCACTGGGGTACACCCCCATGGCTATCCAGCTTCCAAGTAAGGTTTACGCCAATCGATTGAACCAAGCGGCTCGCCTCTTCAATTTCCGACTCAAGTCATTGGTAGATGAAATGGAGGCTGAAATGCCTGGTTCTCAGCTTGTTCTTGTCAACACATATCAGATTATAAATACTATCATAAAAAATCCTAAGGCCAAAGGTTTCAAGGACACGACCAGTCCCTGTTGCGAAGTAAAATCCAGCGTTTCGAGCTCAATACTATGCAAAAGAGGAGGGGAGGCGTGTGGAAATAGGAGCAGTTACGTGTTCTTTGATGGACTGCATCCAACAGAAGCAGTGAACGCCATAATAGCATCCAGGGCCTATCATTCTAATGATTCAGATCTCGTTTATCCCACTAATATCAAACACCTTGCCAATCTCTAG 1119 0.4629 MSPETPPQNLLCISCFIYLLASFLLPCSCSTTSSPTDRGDQIKGMFVFGSSLVDTGNNNFLQTTTRADFLPYGIDFPGGPSGRFTNGKNVVDLIGDHLHLPSIPPFSSPATKGAAIVRGVDFASGGSGILDTTGSFLGEVTSLNQQIRNFEKVTLPDLEAQLGVKSSESLSSYLFVVGVGGNDITFNYFLHAINSNISLQAFTITMTTLLSAQLKKLHSLGGRKFALMSVNPLGYTPMAIQLPSKVYANRLNQAARLFNFRLKSLVDEMEAEMPGSQLVLVNTYQIINTIIKNPKAKGFKDTTSPCCEVKSSVSSSILCKRGGEACGNRSSYVFFDGLHPTEAVNAIIASRAYHSNDSDLVYPTNIKHLANL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1431 372 CDD SGNH_plant_lipase_like 45 356 IPR035669 -
Vvi18g1431 372 Gene3D SGNH hydrolase 34 358 IPR036514 -
Vvi18g1431 372 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 22 370 - -
Vvi18g1431 372 Pfam GDSL-like Lipase/Acylhydrolase 46 351 IPR001087 GO:0016788
Vvi18g1431 372 SUPERFAMILY SGNH hydrolase 170 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1431 Vvi-Chr18 17448944 17452516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1431 13 369 Acyl Lipid Metabolism Gene Families AT4G10950 31.880 2.15e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1431 - - vvi:100249332 731.865