Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00135 ATGGGAGACAACAAAGATCAGGATTTCTTTTCCCACAAATTACCCACAACCTCTCAGGTGGTGGAAGAGATGAAGGAGCTGTGGGGCATGGCTCTACCTATCACAGCTATGAATGTGTTGGTGTTTGTGAGGGCAGTGGTTTCTGTTCTCTTCTTGGGTAGGCTTGGAAGCCTAGAGCTAGCAGGTGGTGCACTTTCCATAGGCTTCACCAACATAACAGGGTACTCTGTTCTTGTGGGTCTTGCATCAGGCCTAGAACCTGTGTGCAGCCAAGCCTATGGTAGCAAAAACTGGGACCTCCTCTCTCTTTCTCTCCAACGCATGGTCCTAATCCTTCTCATGGCAATCATTCCCATAAGTCTTCTCTGGCTGAACCTTGAGAGGATCATGCTGTTCATGGGCCAAGACAGTGCCATAACAGGAATGGCATCAATCTACTGTTTCTACTCTCTACCAGACCTTTTAACAAACACCTTGCTCCAACCTTTAAGGGTTTTTTTAAGGTCCCAAAAGGTGACCAAACCTTTGATGTATTGCTCCCTTGTAGCAGTGTTGTTCCATGTTCCACTGAACTACTTATTGGTGGTGGTGATGGAGCTGGGGGTGCCCGGGGTGGCCATGGCTTCTGTGCTGACCAATCTGAACATGGTGGTGCTTATAGCAGGGTATATGTGTGTGTGCAGGAAGAGGGAGATGGCGTTGAAGTGGGGATGTGGAGGGGGAGTGGTGGCTAGTTTGTGTTCTGGGTTGGGGCAGTTGATGGAGTTTGCTGTGCCTAGTTGCCTTATGATATGTTTAGAGTGGTGGTGGTACGAGATTGTGACTGTGCTGGCTGGGTACTTGCCACGTCCAACACTGGCTGTGGCTGCCACTGGTATTCTGATTCAGACAACTAGCATGATGTACACTGTCCCCATGGCACTTGCAGGGTGTGTTTCTGCCAGGGTAGGGAATGAGCTTGGAGCTGGAAAACCATACAAGGCAAAGCTAGCAGCAATGGTTGCATTAGGATGTGCATTTGTGATAGGCTTCATCAATGTGACATGGACTGTGATATTAGGTCAAAGATGGGCCGGGCTTTTCACCAATGATGAGCCAGTCAAAGCCTTGGTTGCCTCAGTGATGCCAATTATGGGCCTGTGTGAGCTTGGGAACTGCCCACAAACCACGGGCTGTGGGATTCTGCGTGGCACGGCACGGCCTGGTGTGGGGGCCCATATAAACCTGGGCTCATTCTACTTTGTGGGCACTCCGGTGGCGGTGGGCCTGGCATTTTGGTTCAAGGTTGGGTTCAGTGGGCTTTGGTTTGGGCTTCTGTCTGCCCAGGTGGCATGTGCAGTGTCAATCATGTATGTGGTGTTGGTGAGGACTGATTGGGAAGCTGAGGCCCTGAAGGCTGAAAAGCTCACAAGGGTGGAAATGGGTAGTTGCAATGGACTTAGGAACAAGGAGAATGAGAAAGATGAGGAAATGAAAAGGTTGTTGGGAAATGGAAATAGGAACAACAAAGATGACATTTGCTAA 1524 0.4974 MGDNKDQDFFSHKLPTTSQVVEEMKELWGMALPITAMNVLVFVRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMVLILLMAIIPISLLWLNLERIMLFMGQDSAITGMASIYCFYSLPDLLTNTLLQPLRVFLRSQKVTKPLMYCSLVAVLFHVPLNYLLVVVMELGVPGVAMASVLTNLNMVVLIAGYMCVCRKREMALKWGCGGGVVASLCSGLGQLMEFAVPSCLMICLEWWWYEIVTVLAGYLPRPTLAVAATGILIQTTSMMYTVPMALAGCVSARVGNELGAGKPYKAKLAAMVALGCAFVIGFINVTWTVILGQRWAGLFTNDEPVKALVASVMPIMGLCELGNCPQTTGCGILRGTARPGVGAHINLGSFYFVGTPVAVGLAFWFKVGFSGLWFGLLSAQVACAVSIMYVVLVRTDWEAEALKAEKLTRVEMGSCNGLRNKENEKDEEMKRLLGNGNRNNKDDIC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00135 507 MobiDBLite consensus disorder prediction 488 507 - -
Vimu8g00135 507 Pfam MatE 33 193 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu8g00135 507 Pfam MatE 259 420 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu8g00135 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 459 - -
Vimu8g00135 507 CDD MATE_eukaryotic 23 465 IPR045069 GO:0042910|GO:1990961
Vimu8g00135 507 NCBIfam MATE family efflux transporter 33 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00135 Vimu-Chr8 5078048 5082623 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00135 K03327 - gmx:100794753 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00135 8 5078048 5082623 Vimu8g00135 8 5078048 5082623 ECH