Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0896 ATGGAAGATAATAAAGACCAAGACTTCTTTTCACACAAATTCCCAACTACTTCTCAGGTAGTTGAAGAGTTTAAGGAACTATGGAGCATGGCTTTACCAATAACAGCTATGAACATGTTGGTTTTTGTGAGAGCAGTGGTTTCAGTTCTCTTCCTTGGTTGGCTTGGAAGTTTGGAACTTGCAGGTGGTTCACTCTCTTTAGGTTTCACCAACATAACTGGTTACTCTATTCTTGTTGGTCTTGCTTCAGGTCTTGAACCTGTGTGCAGCCAAGCCTATGGTAGCAAAAACTGGGTCCTTCTTTCTCTTTCACTTCAAAGAATGGTTCTTATACTTATTGTGGCAATCATACCTATAACTCTTCTATGGGTCAACCTTGAAAACATCATGTTTTTCATGGGCCAAGACATTGGGATAACAAGAATGGCATCTATGTATTGTTTCTATTCTCTGCCAGATCTTTTAACCAACACCTTGTTGCAACCTTTGAGAGTGTTTTTGAGGTCTCAAAAGGTGACAAAGCCTATGATGTATTGCTCTCTTGTGGCTGTAGCTTTTCATGTTCCTTTGAACTATCTTTTGGTGGTGGTGATGGGTCTTGGTGTGCCTGGAGTAGCCATGGCTTCTGTGGTGACAAACCTCAACATGTTGGTTTTGATGGCAGGGTATGTGTTGTTGTGGAGGAAGAATGAGATTGTGTTTGAATGGGGTTGTTGGGGTGGTGGTGGTGGTGGTGTGGTGTGTGATGGGTTAGTGCAGTTGATAAAGTTGGCTGTGCCTAGTTGCATGATGATATGTTTGGAGTGGTGGTGGTATGAGATTGTGACTGTTATGGCTGGCTATTTGCCTAATCCAACTATGGCTTTAGCTGCTACTGGGATTTTGATTCAAACCACTAGCATGATGTACACTGTCCCTATGGCACTTGCTGGTTGTGTTTCTGCAAGGGTAGGGAATGAGCTTGGTGCTGGTAAACCATACAAGGCAAAGCTAGCAGCCATGGTTGCCCTAGGATGTGCTTTTGGGCTGGGCTTCATCAACGTGACATGGACTGCGATACTCGGACACAGATGGGCTGGGCTTTTCACAAAAGATGAGTCTGTCATAGCCTTGGTTACATCGGTCATGCCGCTTATGGGCCTTTGTGAGCTTGGAAACTACCCACAAACCACAGGCTGTGGCATCCTGCGTGGCACGGCCCGGCCAGTCATAGGGGCCAACATCAACCTAGGCTCATTCTACATCGTGGGCACCCCGGTGGCAATGGGCTTGGCGTTTTGGTTCAAGATTGGGTTCAGCGGGCTTTGGTTTGGGCTTTTGTCGGCCCAGCTGGCATGTCTTATGTCAATACTCTATGTTGTGATGGCAAGTACTGATTGGGAAGCTGAGGCATTGAGGGCTGAGAAGCTCACAATGGTGGAAATGGGTAGTTGCAATGAGCATAAAATTATAGAAAGTGAAAAAGATGAAGAAAATAAGATGTTGTTGGTTAATGAAAATAAGAACAAATATGACATTTGCTAA 1524 0.4475 MEDNKDQDFFSHKFPTTSQVVEEFKELWSMALPITAMNMLVFVRAVVSVLFLGWLGSLELAGGSLSLGFTNITGYSILVGLASGLEPVCSQAYGSKNWVLLSLSLQRMVLILIVAIIPITLLWVNLENIMFFMGQDIGITRMASMYCFYSLPDLLTNTLLQPLRVFLRSQKVTKPMMYCSLVAVAFHVPLNYLLVVVMGLGVPGVAMASVVTNLNMLVLMAGYVLLWRKNEIVFEWGCWGGGGGGVVCDGLVQLIKLAVPSCMMICLEWWWYEIVTVMAGYLPNPTMALAATGILIQTTSMMYTVPMALAGCVSARVGNELGAGKPYKAKLAAMVALGCAFGLGFINVTWTAILGHRWAGLFTKDESVIALVTSVMPLMGLCELGNYPQTTGCGILRGTARPVIGANINLGSFYIVGTPVAMGLAFWFKIGFSGLWFGLLSAQLACLMSILYVVMASTDWEAEALRAEKLTMVEMGSCNEHKIIESEKDEENKMLLVNENKNKYDIC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0896 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 13 481 - -
Lal1g0896 507 TIGRFAM matE: MATE efflux family protein 33 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal1g0896 507 CDD MATE_eukaryotic 23 464 IPR045069 GO:0042910|GO:1990961
Lal1g0896 507 PANTHER PROTEIN DETOXIFICATION 13 481 - -
Lal1g0896 507 Pfam MatE 33 193 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal1g0896 507 Pfam MatE 260 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0896 Lal-Chr1 6427847 6431449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0896 K03327 - gmx:100794753 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0896 1 6427847 6431449 Lal1g0896 1 6427847 6431449 ECH
Lal2g1026 2 7019830 7021608 Lal1g0896 1 6427847 6431449 LSH
Lal1g0896 1 6427847 6431449 Lal9g0907 9 6819022 6823451 LSH