Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00812 ATGAGAGACAACAAAGATCAGGATTTCTTTTCCCACAAATTTCCCACAACCTCTCAGGTGGTGGAAGAGATGAAGGAGCTGTGGGGCATGGCTCTACCTATCACAGCTATGAATATGTTGGTGTTTGTGAGGGCAGTGGTTTCTGTTCTCTTCTTGGGTAGGCTTGGAAGCCTAGAGCTAGCAGGTGGTGCACTTTCCATAGGCTTCACCAACATAACAGGGTACTCTGTTCTTGTGGGTCTTGCAGCAGGCCTAGAACCTGTGTGCAGCCAAGCCTATGGTAGCAAAAACTGGGACCTCCTCTCTCTTTCTCTCCAACGAATGGTCCTAATCCTTCTCATGGCAATCATTCCCATAAGTCTTCTCTGGCTGAACCTTGAGAGGATCATGCTGTTCATGGGCCAAGACAGTGCCATAACAGGAATGGCATCAATCTACTGTTTCTACTCTCTACCAGACCTTTTAACAAACACCTTTCTCCAACCTTTAAGGGTTTTTTTAAGGTCCCAAAAGGTGACCAAACCTATGATGTATTGCTCCCTTGTAGCAGTGTTGTTCCATGTTCCACTGAACTACTTGTTGGTGGTGGTGATGGAGCTGGGGGTGCCTGGGGTGGCCATGGCTTCTGTGCTGACCAATCTGAACATGGTGGTGCTTATAGCAGGGTATATGTGTGTGTGCAGGAAGAGGGAGATGGTGTTGAAGTGGGGATATGGAGGGGGAGTGGTGGCTAGTTTGTGTTCTGGGTTGGGGCAGTTGATGGAGTTTGCTGTGCCTAGTTGCCTTATGATATGTTTAGAGTGGTGGTGGTACGAGATTGTGACTGTGCTGGCTGGGTACTTGCCACGTCCAACACTGGCTGTGGCTGCCACTGGTATTCTGATTCAGACAACTAGCATGATGTACACTGTCCCCATGGCACTTGCAGGGTGTGTTTCTGCCAGGGTAGGGAATGAGCTTGGAGCTGGAAAACCATACAAGGCAAAGCTAGCAGCAATGGTTGCATTAGGATGTGCTTTTGTGATAGGCTTCATCAATGTGACATGGACTGTGATATTAGGTCAAAGATGGGCCGGGCTTTTCACCAATGATGAGCCAGTCAAAGCCTTGGTTGCCTCAGTGATGCCAATTATGGGCCTGTGTGAGCTTGGGAACTACCCACAAACCACGGGCTGTGGGATTTTGCGCGGCACAGCACGGCCCGGTGTGGGGGCCCATATAAACCTGGGCTCATTCTACTTCGTGGGCACTCCGGTGGCAGTGGGCCTGGCATTTTGGTTCAAGGTTGGGTTCAGTGGGCTTTGGTTTGGGCTTCTGTCTGCCCAGGTGGCATGTGCAGTGTCAATCATGTATGTTGTGTTGGTGAGGACTGATTGGGAAGCTGAGGCCCTGAAGGCTGAAAAGCTCACAAGGGTGGAAATGGGTAGTATCAATGGGCTTAGGAACAAGGAGAATGAGAAAGATGAGGAAATGAGAGGGTTGTTGGGAAATGGAAATAGGAACAACAAAGATGACATTTGCTAA 1524 0.4941 MRDNKDQDFFSHKFPTTSQVVEEMKELWGMALPITAMNMLVFVRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLAAGLEPVCSQAYGSKNWDLLSLSLQRMVLILLMAIIPISLLWLNLERIMLFMGQDSAITGMASIYCFYSLPDLLTNTFLQPLRVFLRSQKVTKPMMYCSLVAVLFHVPLNYLLVVVMELGVPGVAMASVLTNLNMVVLIAGYMCVCRKREMVLKWGYGGGVVASLCSGLGQLMEFAVPSCLMICLEWWWYEIVTVLAGYLPRPTLAVAATGILIQTTSMMYTVPMALAGCVSARVGNELGAGKPYKAKLAAMVALGCAFVIGFINVTWTVILGQRWAGLFTNDEPVKALVASVMPIMGLCELGNYPQTTGCGILRGTARPGVGAHINLGSFYFVGTPVAVGLAFWFKVGFSGLWFGLLSAQVACAVSIMYVVLVRTDWEAEALKAEKLTRVEMGSINGLRNKENEKDEEMRGLLGNGNRNNKDDIC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00812 507 MobiDBLite consensus disorder prediction 488 507 - -
Vian8g00812 507 Pfam MatE 259 420 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian8g00812 507 Pfam MatE 33 193 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian8g00812 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 459 - -
Vian8g00812 507 CDD MATE_eukaryotic 23 465 IPR045069 GO:0042910|GO:1990961
Vian8g00812 507 NCBIfam MATE family efflux transporter 33 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00812 Vian-Chr8 17303260 17306896 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00812 K03327 - gmx:100794753 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00812 8 17303260 17306896 Vian8g00812 8 17303260 17306896 ECH