Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07860 ATGTGCCAGTTATCATCATCAACCTCTTCTGTCTCCACTTTGTGTGAAAATAATAACAACCAAACAAACATATCCACAACCAAACTCAAGAAACCTGACATGTTTACACCATTGATCCCTAAATCCCCAACATTCAAACAACAAGAAACCCACACAAAAAATACCCATTTTTCTCTTGCCATCAACGAAGCCAAACATATTTCAAACATAGCATTACCCATGGTTTTAACAGGCTTATTAATGTACTCTCGTTCCATCATCTCAATGCTGTTTCTCGGCCGTGTTGGCGAACTCGCTTTAGCAGGCGGATCACTTGCTATAGGGTTCGCCAACATAACCGGTTACTCCATTCTCTCTGGTCTTGCCATGGGAATGGAGCCTATTTGCGGTCAGGCTTTCGGTGCCAAAAGATTCAAACTCCTTGGTCTTACAATGCAAAGAACAACGATTCTTCTTCTAGTAACATCAATTTTCATTTCATTCTTATGGCTTAACATGAAGAGAATTCTGCTTTTATGTGGCCAACAAGAAGATATAGCAACCGTTGCGCAAACATACATTCTTTATTCTCTCCCTGATCTCGTAGCGCAATCATTTCTACACCCTTTGAGAATCTATCTTCGAAGCCAATCCATAACTCTTCCTTTAACATACAGTGCTACTCTCTCTATTCTTCTTCACCTTCCTATAAACTATTTTCTTGTTTCTGTCCTCAACTTAGGAATCAAAGGAATCGCGATAGGTTCCGTTTGGACGAATTTCAACCTCGTTGCTTCGTTGATTATTTACATTTGGGTCTCTGGAACACACAAGAGAACATGGAATGGCTTTTCATCTTCTTGTTTCAAAGGATGGAAATCGCTTTTGAATTTAGCGATTCCAAGCTGCATTTCGGTTTGTCTGGAATGGTGGTGGTACGAAATCATGATTTTAATTTGCGGTTTATTGATCAACCCACATGCAACTGTTGCATCTATGGGTGTTTTGATTCAAACAACTGCATTAATCTACATTTTTCCTTCTTCGTTGAGTTTCGGCGTTTCGACAAGAGTTGGTAATGAACTTGGTGCTGAAAATCCACAGAAAGCAAAACTTGCAGCAATAGTAGGACTCTGTTTTAGTTTTGTTTTGGGCTTTTCTGCTTTGTTGTTTGCATTTTCGGTTAGAAACATTTGGGCTTCAATGTTCACAAATGATCCACAAATCATTGCTTTAACATCAATGGTGTTACCTATCATAGGACTTTGCGAGCTCGGAAACTGTCCACAAACAACGGTTTGTGGCGTTTTGCGAGGGACTGCTCGCCCGAAGTTGGGCGCGAATATTAACTTAGGATGTTTTTATCTCGTGGGAATGCCTGTTGCGGTTTGGTTGAGTTTTGTTGCTGGATTTGATTTCAAAGGTTTGTGGTTTGGACTTTTGGCTGCTCAAGGTTCTTGTATGGTCACAATGTTGTTTGTTTTGTTTCGTACCAATTGGGAAAATCAAGTAGAAAGAGCCAAGGAGTTAACATCTTCGGACTCAAGCCAAGAAGAAGAAGAACAAGAGAAAGGATTTGTGAGTTCATGTGACACAAAAGAGTGTTCAAATTCGTTAGTTTGA 1602 0.3995 MCQLSSSTSSVSTLCENNNNQTNISTTKLKKPDMFTPLIPKSPTFKQQETHTKNTHFSLAINEAKHISNIALPMVLTGLLMYSRSIISMLFLGRVGELALAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLTMQRTTILLLVTSIFISFLWLNMKRILLLCGQQEDIATVAQTYILYSLPDLVAQSFLHPLRIYLRSQSITLPLTYSATLSILLHLPINYFLVSVLNLGIKGIAIGSVWTNFNLVASLIIYIWVSGTHKRTWNGFSSSCFKGWKSLLNLAIPSCISVCLEWWWYEIMILICGLLINPHATVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAENPQKAKLAAIVGLCFSFVLGFSALLFAFSVRNIWASMFTNDPQIIALTSMVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFVAGFDFKGLWFGLLAAQGSCMVTMLFVLFRTNWENQVERAKELTSSDSSQEEEEQEKGFVSSCDTKECSNSLV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07860 533 MobiDBLite consensus disorder prediction 502 521 - -
Vifa1g07860 533 NCBIfam MATE family efflux transporter 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07860 533 CDD MATE_eukaryotic 63 499 IPR045069 GO:0042910|GO:1990961
Vifa1g07860 533 MobiDBLite consensus disorder prediction 502 533 - -
Vifa1g07860 533 Pfam MatE 73 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07860 533 Pfam MatE 294 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07860 533 PANTHER MULTIDRUG RESISTANCE PROTEIN 60 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07860 Vifa-Chr1 1227104991 1227106592 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07860 K03327 - gmx:100811560 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07860 1 1227104991 1227106592 Vifa1g07860 1 1227104991 1227106592 ECH