Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1416 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1417 Acco02g3413 . Accr2g00497 . Adu09g03134 . . . . . . . . . Alju01g3406 . . . . . Arst9g04210 . . . Bisa03g2913 . . . Car04g01129 . . . Dere01g0462 . . . Enph2g2432 . Glsi12g0942 . Gma10g02154 . . . Gso10g2019 . . . . . . . . . . . . . . . Lapu7g01886 . Lasa6g03860 . Lele05g2527 Lele06g2507 Lele07g2539 Lele08g2444 . . . . . . Mal1g2152 . Mepo4g04076 . Mesa1g04424 . Mibi02g3110 . Mtr1g3656 . . . Phco6g02273 . Prci1g0524 . . . Pste4g02377 . Pte16g00431 . . . Pumo3g01213 . Pvu7g0902 . Rops6g02520 . Seca8g07188 . Spst10g00763 . . . . . Tpr1g0845 . Trre1g05132 . Tsu01g04308 . Vian3g00782 . . . Vimu3g02840 . Viun7g03007 . Vivi1g04640 . . .
Vvi18g1418 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal13g0096 . . . . . Lan20g0112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1419 . . . . Adu10g01625 . . . . . . . . . . . . . . . Arst10g02106 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu9g01217 . Lasa5g03211 . . . . . . . . . . . . . Mepo3g06715 . Mesa9g04238 . . . . . Phac9g01162 . Phco7g01599 . . . . . Pste2g03611 . . . . . Pumo10g01552 . Pvu9g1477 . Rops10g02258 . Seca4g02137 . Spst9g01621 . . . Sto10g2214 . . . Trre5g04151 . . . . . Vifa2g03048 . Vimu10g01585 . Viun9g01916 . . . . .
Vvi18g1420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1421 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1422 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1416 Chr18 16137227 16137614 -
Vvi Vvi18g1417 Chr18 16149212 16161492 +
Acco Acco02g3413 Chr02 47897896 47908735 +
Accr Accr2g00497 Chr2 11289968 11310558 -
Adu Adu09g03134 Chr09 119273747 119277798 +
Alju Alju01g3406 Chr01 62221584 62227325 +
Arst Arst9g04210 Chr9 117157568 117161666 +
Bisa Bisa03g2913 Chr03 47244647 47255718 -
Car Car04g01129 Chr04 11483345 11492427 +
Dere Dere01g0462 Chr01 10189165 10196612 -
Enph Enph2g2432 Chr2 40601257 40608526 +
Glsi Glsi12g0942 Chr12 27187512 27196688 -
Gma Gma10g02154 Chr10 49054110 49063241 +
Gso Gso10g2019 Chr10 47175207 47185226 +
Lapu Lapu7g01886 Chr7 34901701 34906434 -
Lasa Lasa6g03860 Chr6 599825630 599830818 -
Lele Lele05g2527 Chr05 41012895 41021808 +
Lele Lele06g2507 Chr06 32847239 32852027 +
Lele Lele07g2539 Chr07 30772461 30783105 +
Lele Lele08g2444 Chr08 30135962 30140753 +
Mal Mal1g2152 Chr1 28346051 28348330 -
Mepo Mepo4g04076 Chr4 50484229 50491320 -
Mesa Mesa1g04424 Chr1 69865746 69869471 -
Mibi Mibi02g3110 Chr02 55570314 55577433 +
Mtr Mtr1g3656 Chr1 48248321 48252911 +
Phco Phco6g02273 Chr6 43964370 43968072 -
Prci Prci1g0524 Chr1 4956623 4973346 -
Pste Pste4g02377 Chr4 16954292 16959712 -
Pte Pte16g00431 Chr16 6202433 6207709 -
Pumo Pumo3g01213 Chr3 19507030 19512652 +
Pvu Pvu7g0902 Chr7 8810978 8815698 +
Rops Rops6g02520 Chr6 45664361 45671146 -
Seca Seca8g07188 Chr8 168208961 168225406 -
Spst Spst10g00763 Chr10 8024588 8028688 -
Tpr Tpr1g0845 Chr1 7136654 7140759 -
Trre Trre1g05132 Chr1 57544584 57549489 -
Tsu Tsu01g04308 Chr01 50884282 50887916 +
Vian Vian3g00782 Chr3 8226965 8231187 +
Vimu Vimu3g02840 Chr3 42632244 42634891 -
Viun Viun7g03007 Chr7 33064881 33069537 -
Vivi Vivi1g04640 Chr1 98980103 98986147 +
Vvi Vvi18g1418 Chr18 16184538 16185203 -
Lal Lal13g0096 Chr13 611839 615098 +
Lan Lan20g0112 Chr20 673414 676662 +
Vvi Vvi18g1419 Chr18 16209748 16217640 +
Adu Adu10g01625 Chr10 73541779 73544575 +
Arst Arst10g02106 Chr10 72585978 72588661 +
Lapu Lapu9g01217 Chr9 25987102 25992386 -
Lasa Lasa5g03211 Chr5 543951738 543954078 +
Mepo Mepo3g06715 Chr3 80912181 80915563 +
Mesa Mesa9g04238 Chr9 75181679 75184364 +
Phac Phac9g01162 Chr9 9182690 9186861 -
Phco Phco7g01599 Chr7 15332464 15335426 +
Pste Pste2g03611 Chr2 38369628 38372927 +
Pumo Pumo10g01552 Chr10 20526934 20530907 +
Pvu Pvu9g1477 Chr9 20906360 20910335 -
Rops Rops10g02258 Chr10 40184597 40187616 +
Seca Seca4g02137 Chr4 36146656 36151167 -
Spst Spst9g01621 Chr9 16441544 16444399 +
Sto Sto10g2214 Chr10 32141159 32146823 +
Trre Trre5g04151 Chr5 43167751 43170662 +
Vifa Vifa2g03048 Chr2 867617248 867620100 +
Vimu Vimu10g01585 Chr10 17901773 17904174 +
Viun Viun9g01916 Chr9 29086876 29090519 -
Vvi Vvi18g1420 Chr18 16219152 16221368 +
Vvi Vvi18g1421 Chr18 16232013 16233137 +
Vvi Vvi18g1422 Chr18 16235408 16235956 +
Vvi Vvi18g1423 Chr18 16285607 16288197 -
Vvi Vvi18g1424 Chr18 16296859 16297485 +
Vvi Vvi18g1425 Chr18 16304728 16306923 +