Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1378 . . . . . . . . Aev09g2060 . Ahy19g2715 . Aip09g03177 . . . Amo19g3444 . . . . . . . . . . . . . . . . . Dod06g0969 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1214 Sto8g2357 . . . . . . . . . . . . . . . . . .
Vvi18g1379 Acco10g2494 . Accr4g00280 . Adu08g00478 . . . . . . . . . Alju08g0283 . . . . . Arst8g00610 . Bach12g00938 . Bisa09g0970 . Bva06g02938 . . . . Cca03g01012 Dere04g1168 . . . Enph1g1788 . Glsi08g1009 . Gma04g02289 Gma06g01112 Gma14g01585 Gma13g00260 Gso4g2005 Gso4g2005 Gso4g2005 Gso4g2005 Lal4g0463 . . . . . Lan14g0557 . . . . . Lapu9g01390 . Lasa5g02955 . Lele01g0228 Lele02g0223 Lele03g0234 Lele04g0229 . . . . Lja1g4900 . . Mal2g1841 Mepo3g06497 . Mesa9g04016 . Mibi05g0236 . Mtr1g0865 Mtr3g3071 Phac9g01070 . Phco7g01374 . Prci15g0347 . . Psa5g1881 . . . . . . Pumo10g01359 . Pvu9g1411 . Rops10g02043 . Seca4g02496 . Spst9g01416 . . Ssu1g2867 . Sto9g2794 Tpr1g3097 Tpr2g5377 Trre5g03768 . Tsu01g00985 . Vian4g01425 . Vifa2g02771 . Vimu10g02420 . Viun9g02257 . Vivi3g02910 . . .
Vvi18g1380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1381 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma10g02163 . . . Gso10g2029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g2134 . . . . . . . Mtr1g3674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g0830 . . . Tsu01g04342 . . . . . . . . . . . . .
Vvi18g1382 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g2135 . . . . . . . Mtr1g3673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g0831 . . . Tsu01g04341 . . . . . . . . . . . . .
Vvi18g1383 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01017 . . . . . . . . . . . . Gma20g01666 . . . . . . . . . . . Lal9g0854 . . . . . . . . . . . . . . . . . . Lja5g0847 Lja2g2902 Mal1g2874 . . . . . . . Mtr1g3520 . . . . . . . Psa6g4214 . . . . . . . . . . . . . . . . . . . . . Tpr1g0979 . . . Tsu01g04166 . . . . . . . . . . . . .
Vvi18g1384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1385 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Car Car04g01017 Chr04 10308103 10318010 +
Gma Gma20g01666 Chr20 43780693 43788158 -
Lja Lja5g0847 Chr5 8062197 8068535 -
Mal Mal1g2874 Chr1 41049282 41056650 +
Mtr Mtr1g3520 Chr1 46762303 46769570 +
Tpr Tpr1g0979 Chr1 8506967 8518205 -
Tsu Tsu01g04166 Chr01 49578968 49586134 +
Vvi Vvi18g1376 Chr18 14002147 14002275 +
Vvi Vvi18g1377 Chr18 14002488 14002937 +
Vvi Vvi18g1378 Chr18 14023149 14027197 -
Aev Aev09g2060 Chr09 23796984 23803695 +
Ahy Ahy19g2715 Chr19 148429400 148436003 +
Aip Aip09g03177 Chr09 137114791 137121178 +
Amo Amo19g3444 Chr19 147817283 147823932 +
Dod Dod06g0969 Chr06 12329237 12336589 -
Sto Sto5g1214 Chr5 8189559 8193896 -
Sto Sto8g2357 Chr8 15939028 15945670 +
Vvi Vvi18g1379 Chr18 14033592 14034350 +
Acco Acco10g2494 Chr10 36236092 36237440 +
Accr Accr4g00280 Chr4 2784213 2785810 -
Adu Adu08g00478 Chr08 8634884 8635861 -
Alju Alju08g0283 Chr08 2078197 2079579 -
Arst Arst8g00610 Chr8 8606486 8607757 -
Bach Bach12g00938 Chr12 6651804 6652484 +
Bisa Bisa09g0970 Chr09 14188445 14189161 -
Bva Bva06g02938 Chr06 18310224 18311220 +
Cca Cca03g01012 Chr03 24855719 24856932 -
Dere Dere04g1168 Chr04 13055511 13056191 +
Enph Enph1g1788 Chr1 42879011 42879673 +
Glsi Glsi08g1009 Chr08 7467507 7468154 -
Gma Gma04g02289 Chr04 53344918 53345732 -
Gma Gma06g01112 Chr06 10413689 10414969 +
Gma Gma14g01585 Chr14 39293417 39294471 -
Gma Gma13g00260 Chr13 12968902 12970009 +
Gso Gso4g2005 Chr4 50403470 50404830 -
Gso Gso4g2005 Chr4 50403470 50404830 -
Gso Gso4g2005 Chr4 50403470 50404830 -
Gso Gso4g2005 Chr4 50403470 50404830 -
Lal Lal4g0463 Chr4 3265600 3266295 +
Lan Lan14g0557 Chr14 11770861 11772504 -
Lapu Lapu9g01390 Chr9 28154792 28155979 -
Lasa Lasa5g02955 Chr5 520373838 520374638 +
Lele Lele01g0228 Chr01 1308256 1308927 -
Lele Lele02g0223 Chr02 1258768 1259445 -
Lele Lele03g0234 Chr03 1279076 1279747 -
Lele Lele04g0229 Chr04 1363895 1364435 -
Lja Lja1g4900 Chr1 67311538 67312968 -
Mal Mal2g1841 Chr2 22205416 22206129 -
Mepo Mepo3g06497 Chr3 78955821 78956974 +
Mesa Mesa9g04016 Chr9 72593223 72593948 +
Mibi Mibi05g0236 Chr05 2423079 2424363 -
Mtr Mtr1g0865 Chr1 9914701 9915300 -
Mtr Mtr3g3071 Chr3 44559097 44560395 +
Phac Phac9g01070 Chr9 8158242 8159900 +
Phco Phco7g01374 Chr7 12470062 12470895 +
Prci Prci15g0347 Chr15 2298647 2299608 -
Psa Psa5g1881 Chr5 144832897 144834912 -
Pumo Pumo10g01359 Chr10 18039887 18041419 +
Pvu Pvu9g1411 Chr9 20032682 20034240 +
Rops Rops10g02043 Chr10 37063531 37064563 +
Seca Seca4g02496 Chr4 42566577 42567278 +
Spst Spst9g01416 Chr9 14098203 14098952 +
Ssu Ssu1g2867 Chr1 75823608 75824372 -
Sto Sto9g2794 Chr9 29624345 29631413 -
Tpr Tpr1g3097 Chr1 35474801 35475669 +
Tpr Tpr2g5377 Chr2 60588105 60589335 -
Trre Trre5g03768 Chr5 37747731 37748483 +
Tsu Tsu01g00985 Chr01 9017682 9018290 -
Vian Vian4g01425 Chr4 28743280 28744077 -
Vifa Vifa2g02771 Chr2 770102372 770103199 -
Vimu Vimu10g02420 Chr10 35152668 35154372 +
Viun Viun9g02257 Chr9 31968733 31970329 -
Vivi Vivi3g02910 Chr3 48524252 48526042 -
Vvi Vvi18g1380 Chr18 14041132 14041467 -
Vvi Vvi18g1381 Chr18 14041623 14042290 -
Gma Gma10g02163 Chr10 49185977 49189115 +
Gso Gso10g2029 Chr10 47305206 47308851 +
Mal Mal1g2134 Chr1 27925393 27927979 -
Mtr Mtr1g3674 Chr1 48448405 48451303 +
Tpr Tpr1g0830 Chr1 6914997 6918180 -
Tsu Tsu01g04342 Chr01 51377684 51380566 +
Vvi Vvi18g1382 Chr18 14071663 14072649 -
Mal Mal1g2135 Chr1 27933201 27935329 -
Mtr Mtr1g3673 Chr1 48443296 48445340 +
Tpr Tpr1g0831 Chr1 6919142 6921187 -
Tsu Tsu01g04341 Chr01 51374309 51375924 +
Vvi Vvi18g1383 Chr18 14076310 14077515 -
Car Car04g01017 Chr04 10308103 10318010 +
Gma Gma20g01666 Chr20 43780693 43788158 -
Lal Lal9g0854 Chr9 6292980 6294119 -
Lja Lja5g0847 Chr5 8062197 8068535 -
Lja Lja2g2902 Chr2 48434181 48445840 -
Mal Mal1g2874 Chr1 41049282 41056650 +
Mtr Mtr1g3520 Chr1 46762303 46769570 +
Psa Psa6g4214 Chr6 372462655 372469486 -
Tpr Tpr1g0979 Chr1 8506967 8518205 -
Tsu Tsu01g04166 Chr01 49578968 49586134 +
Vvi Vvi18g1384 Chr18 14096408 14096917 +
Vvi Vvi18g1385 Chr18 14109274 14109357 +
Lal Lal9g0854 Chr9 6292980 6294119 -
Aev Aev09g2060 Chr09 23796984 23803695 +
Ahy Ahy19g2715 Chr19 148429400 148436003 +
Aip Aip09g03177 Chr09 137114791 137121178 +
Amo Amo19g3444 Chr19 147817283 147823932 +
Dod Dod06g0969 Chr06 12329237 12336589 -
Sto Sto8g2357 Chr8 15939028 15945670 +