Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0847 ATGATGTCTGCTAACGACCCAGTTGAGAGTTTCTTCAATTCCATTCAAGGGATGAAGGATTCGCTGTCGCCTTTGGAAGTGGGTTTTCGTAAGGCGGCGAAGGATCTTGAGCATTGTTTGTTGGCAGGGGTGAAGAACAAGGGGAATGGTGTTTGTTTGATTGCTCAGGTGAGAGATGGTGGTGAGTTTCAGATCTGTGATGTCAAGAAGCAGAAGAAAGGGTTGTCTATGAAGGTTTCTTTCAAGGCTTTCTTTGGTATGTTTTCACAGAATAGAGCAGCTGAAGTGTGTGAGGATGATGTGTCTTCTTGTAGTAATTGCTTGCAGTTTGCTGTTACATGGTCTATGTTGGTTAATGGGTTTCTTCAGTCTTTGCCACATCCTTTCAAATCTGGGAGGAAGAGGTTTCAGAAAGTGGGGGATGAAGATAAGTTGTGTTCATGCATGAAGCCTAGTGTTTCATCATGTGAGTTGAAGCATAATGAGTCCAAGGGTCAGTTTGTTAGGACAGTTAGGGAGAAGGTTGTGAGAAAGAAGGATGGAAAGCATGTTTCACCTGAATTCCTTATTGGCTTTGTCTTTGATAATTTGTCTCATGCTCTTCAGAGTCTTGATAATGGGGTGCAAGTAAATGACCTTGGCTGTGAGAAGCCTTGTTCAACTCATTCTGGTCATGTGAATGCATTCACAAGTTTCTTGGAAGGGCATAGAGTAGATGTTAGTAGGTTCTTGGGGAATTTAAATTTTGCAAAGGTGGGTGGTGTGCCATCAAGTGCAACTAAAGAAGAAAGCGCTCTACCAAATGAGGGGGGAGATAATAGTGGTAATGGTGAAAATAAGGAAGACAATAAGGGAGGAATTTCTCCACAGAAGGTTGCCTCTAACATATTCAGTATTCCTTTGTCAAATGTGGAACGTCTAAAGACTACAATTTCCACGGTCTCATTCACAGAATTGGTTGAGATGCTACCGCAGCTGGGGAAAACTTCTAAAGACCATCCTGATAAGAAGAAACTATTCTCTGTTCAAGATTTCTTTAGATACACAGAGGCTGAAGGAAAGAGGTTCTTTGAGGAGCTGGATAGAGATGGGGATGGCCAAGTAACTCTGGAAGATTTAGAAATGGCAATGCGACAGAGAAAGCTGCCACGAAGATATGCTAAAGAATTTATGAGCCGTACTAAAAGTCACTTATTTTCTAGGTCATTTGGCTGGAGACAATTTTTATCATTAATGGAACAGAAGGAGCCAACTATTCTTCGTGCATATACTTCACTGTGTCTAAGCAAGTCAGGGACTCTGAAGAAGAGTGAAATATTGGAATCACTTAAGAACGCAGGATTGCCTTCAAATGAAGACAATGCTGTTGCTATGATGCGATTTCTGAATGCAGACACAGAAGAGTCTATTTCATATGGGCATTTCCGCAATTTCATGCTTCTGCTTCCCTCAGATCGTCTTCAAGAGGATCCTAGGAGTATTTGGTTTGAAGCTGCGACTGTAGTTGCCGTTCCACCACCTGTTGAATTTCCTGCTGGAAGTGTTCTAAGATCTGCATTGGCAGGTGGTCTTGCTTGTGCCCTATCTTGTGCATTACTTCATCCAGTTGATTCAATCAAGACTCGAGTACAAGCATCAACCATGTCCTTTCCTGAAATAATTTCTAAGCTGCCACAGATTGGGGTACGAGGTTTATACAGGGGGTCAATCCCTGCAATTCTTGGACAGTTTTCAAGCCATGGCTTGCGAACTGGGATATTTGAAGCGAGTAAATTGGTGATGATAAATGTTGCCCCGACACTACCAGAACTTCAGGTACAATCCGTGGCATCATTCTGTAGCACGTTTTTGGGAACAGCTGTGCGGATTCCCTGTGAGGTGTTAAAGCAGAGGTTACAGGCTGGTATTTTTAACAATGTCGGCGAGGCTTTGGTCGGTACTTGGGAGCAGGATGGTGTTAAGGGTTTCTTTCGTGGAACTGGAGCTACCCTTTGTCGCGAGGTTCCGTTTTATGTTGCTGGCATGGGGCTTTATGCTGAATCTAAGAAGGGTGTGCAAAAACTGCTGGGACGGGAACTGGAGGCCTGGGAAACAATTGCGGTTGGAGCTTTATCCGGCGGCCTGGCGGCTGTTGTGACGACACCATTTGATGTCATGAAAACTAGAATGATGACTGCGCAGGGTCGGTCGGTGCCGATGACCATGATAGCTATCTCTATACTCCGGCGTGAGGGACCCCTTGGTTTGTTTAAAGGGGCTGTGCCAAGGTTCTTTTGGATTGCTCCTCTTGGTGCGATGAACTTTGCAGGTTATGAGTTAGCAAGGAAGGCCATGAATAAAAATGAGGAGGCTAAGACTGTCAGTTCAGAGTAA 2373 0.4412 MMSANDPVESFFNSIQGMKDSLSPLEVGFRKAAKDLEHCLLAGVKNKGNGVCLIAQVRDGGEFQICDVKKQKKGLSMKVSFKAFFGMFSQNRAAEVCEDDVSSCSNCLQFAVTWSMLVNGFLQSLPHPFKSGRKRFQKVGDEDKLCSCMKPSVSSCELKHNESKGQFVRTVREKVVRKKDGKHVSPEFLIGFVFDNLSHALQSLDNGVQVNDLGCEKPCSTHSGHVNAFTSFLEGHRVDVSRFLGNLNFAKVGGVPSSATKEESALPNEGGDNSGNGENKEDNKGGISPQKVASNIFSIPLSNVERLKTTISTVSFTELVEMLPQLGKTSKDHPDKKKLFSVQDFFRYTEAEGKRFFEELDRDGDGQVTLEDLEMAMRQRKLPRRYAKEFMSRTKSHLFSRSFGWRQFLSLMEQKEPTILRAYTSLCLSKSGTLKKSEILESLKNAGLPSNEDNAVAMMRFLNADTEESISYGHFRNFMLLLPSDRLQEDPRSIWFEAATVVAVPPPVEFPAGSVLRSALAGGLACALSCALLHPVDSIKTRVQASTMSFPEIISKLPQIGVRGLYRGSIPAILGQFSSHGLRTGIFEASKLVMINVAPTLPELQVQSVASFCSTFLGTAVRIPCEVLKQRLQAGIFNNVGEALVGTWEQDGVKGFFRGTGATLCREVPFYVAGMGLYAESKKGVQKLLGRELEAWETIAVGALSGGLAAVVTTPFDVMKTRMMTAQGRSVPMTMIAISILRREGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMNKNEEAKTVSSE* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0847 790 SUPERFAMILY EF-hand 284 378 IPR011992 -
Lja5g0847 790 MobiDBLite consensus disorder prediction 261 289 - -
Lja5g0847 790 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN-LIKE 116 783 - -
Lja5g0847 790 Gene3D - 308 418 - -
Lja5g0847 790 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 116 783 - -
Lja5g0847 790 MobiDBLite consensus disorder prediction 258 289 - -
Lja5g0847 790 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Lja5g0847 790 Pfam Mitochondrial carrier protein 514 594 IPR018108 -
Lja5g0847 790 Pfam Mitochondrial carrier protein 693 781 IPR018108 -
Lja5g0847 790 Pfam Mitochondrial carrier protein 607 686 IPR018108 -
Lja5g0847 790 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Lja5g0847 790 SUPERFAMILY Mitochondrial carrier 514 772 IPR023395 -
Lja5g0847 790 ProSiteProfiles Solute carrier (Solcar) repeat profile. 693 777 IPR018108 -
Lja5g0847 790 Gene3D - 430 501 - -
Lja5g0847 790 Gene3D Mitochondrial carrier domain 517 789 IPR023395 -
Lja5g0847 790 ProSiteProfiles Solute carrier (Solcar) repeat profile. 602 684 IPR018108 -
Lja5g0847 790 ProSiteProfiles Solute carrier (Solcar) repeat profile. 513 593 IPR018108 -
Lja5g0847 790 SUPERFAMILY EF-hand 352 483 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0847 Lja-Chr5 8062197 8068535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0847 1 784 EF-hand Containing Proteins AT2G35800 62.805 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0847 - - gmx:100807842 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0847 5 8062197 8068535 Lja5g0847 5 8062197 8068535 ECH