Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1388 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g1064 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1391 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01136 . . . . . . . . . . . Gma10g02161 . . . Gso10g2027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g2141 . . . . . . . Mtr1g3671 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto10g2242 . Tpr1g0834 . . . Tsu01g04327 . . . . . . . . . . . . .
Vvi18g1392 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1394 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01135 . . . . . . . . . . . Gma10g02160 . . . Gso10g2026 . . . Lal4g0511 . . . . Lal9g0855 Lan14g0515 . . . . Lan14g0515 . . . . . . . . . . . . . . Mal1g2143 . . . . . . . Mtr1g3670 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto10g2239 . Tpr1g0836 . . . Tsu01g04322 . . . . . . . . . . . . .
Vvi18g1395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lal Lal4g0511 Chr4 3705211 3715970 +
Vvi Vvi18g1386 Chr18 14117168 14117404 +
Vvi Vvi18g1387 Chr18 14122252 14123220 +
Vvi Vvi18g1388 Chr18 14133002 14134389 +
Lal Lal2g1064 Chr2 7397092 7403777 +
Vvi Vvi18g1389 Chr18 14139140 14140342 -
Vvi Vvi18g1390 Chr18 14147530 14147760 +
Vvi Vvi18g1391 Chr18 14160507 14171722 -
Car Car04g01136 Chr04 11610890 11621403 -
Gma Gma10g02161 Chr10 49162099 49172287 -
Gso Gso10g2027 Chr10 47281418 47289842 -
Mal Mal1g2141 Chr1 28099981 28109971 +
Mtr Mtr1g3671 Chr1 48411897 48423102 -
Sto Sto10g2242 Chr10 32481429 32489677 -
Tpr Tpr1g0834 Chr1 6986844 6996475 +
Tsu Tsu01g04327 Chr01 51191086 51199785 -
Vvi Vvi18g1392 Chr18 14204751 14205007 -
Vvi Vvi18g1393 Chr18 14207946 14210222 +
Vvi Vvi18g1394 Chr18 14210516 14227529 +
Car Car04g01135 Chr04 11583743 11585532 -
Gma Gma10g02160 Chr10 49138114 49143855 -
Gso Gso10g2026 Chr10 47266446 47272882 -
Lal Lal4g0511 Chr4 3705211 3715970 +
Lal Lal9g0855 Chr9 6298979 6304638 +
Lan Lan14g0515 Chr14 10763476 10767832 -
Lan Lan14g0515 Chr14 10763476 10767832 -
Mal Mal1g2143 Chr1 28129121 28135057 +
Mtr Mtr1g3670 Chr1 48392468 48397766 -
Sto Sto10g2239 Chr10 32442328 32456991 -
Tpr Tpr1g0836 Chr1 7028684 7033819 +
Tsu Tsu01g04322 Chr01 51134971 51139658 -
Vvi Vvi18g1395 Chr18 14230242 14231060 +