Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1383 ATGGACGCCAGACTCTCTATTGCTCTGGGTCTGCCACCGCCAAACCTTAGCTACCACCACCATCATTATCACCCAATTCCCTCCGATTTCACCACTCTCTTCAACAATCTCACTACCGCCCTCATCTCCACTCCAAGCCCTAGCTCAAATGCCCACGAAACCACCACTCGACACGGCAGACCCACCACCACCACCACCAACCCCTTCTTCTTCTCCACTTCAATGTCACAGCCCGCTTCCCCTATATTGGCCAAGTCTGCTGCCCCCACAACCAAGTCTCTCATAAAGTCCCTTTCCGTCTTCGAACGAGCCCTCATCGGTGCTGGAGGCGGCGGAATCGCCGGCGCATTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAAACGAAGCTCCAGACAAGAGGGGCTTCGGAGATTTACAAAGGGACGTTGGACGCAATCGTGAAGACATTCCAGGAAAGGGGTGTTCTAGGATTTTACAGTGGCATCTCGGCCGTGATTGTCGGATCCGCGGCCTCTTCGGCGGTATATTTTGGGACTTGTGAGTTCGGGAAGTCGATTTTGGCTAAGGTTCCGCAATACCCATCACTCTTGATTCCTCCGACCGCCGGAGCTATGGGCAACATTATGTCTTCGGCGATAATGGTGCCCAAGGAGTTGATTACACAGAGAATGCAAGCTGGTGCAAAGGGGAGGTCCTGGCAGGTGCTATTGGGAATTCTTGAGAGAGATGGGATTTTGGGTCTTTATGCAGGCTATTCTGCTACATTGTTGAGGAATTTGCCTGCTGGGGTACTGAGTTATTCGTCTTTCGAGTATTTGAAAGCTGCAGTGTTAAGTAGGACTAAAAATGATTCTTTGGAGCCATTTCAGAGTGTGTGTTGTGGAGCTTTGGCTGGCGCAATATCTGCTTCGCTCACCACCCCGCTAGATGTAGTTAAGACTAGATTGATGACTCAGGTTCATGGAGAGGCCATAAATAAGGTTTCAGCGGCAATGTATAGTGGGGTTTCGGCTACTGTAAAGCAAATTTTGAGGGATGAGGGGTGGGTTGGACTGACCAGTGGAATGGGTCCCCGGGTTGTTCATAGCGCCTGTTTTTCAGCATTGGGGTACTTCGCATTTGAGACGGCTAAGATGGCCATCTTGCATCAGTATCTAAAGCGCAAAGAGTTGTGTGAAATGAACGTTGCTTCTACTTGA 1206 0.5066 MDARLSIALGLPPPNLSYHHHHYHPIPSDFTTLFNNLTTALISTPSPSSNAHETTTRHGRPTTTTTNPFFFSTSMSQPASPILAKSAAPTTKSLIKSLSVFERALIGAGGGGIAGAFTYFCLHPLDTIKTKLQTRGASEIYKGTLDAIVKTFQERGVLGFYSGISAVIVGSAASSAVYFGTCEFGKSILAKVPQYPSLLIPPTAGAMGNIMSSAIMVPKELITQRMQAGAKGRSWQVLLGILERDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSRTKNDSLEPFQSVCCGALAGAISASLTTPLDVVKTRLMTQVHGEAINKVSAAMYSGVSATVKQILRDEGWVGLTSGMGPRVVHSACFSALGYFAFETAKMAILHQYLKRKELCEMNVAST* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1383 401 FunFam Protein MITOFERRINLIKE 1, chloroplastic 71 233 - -
Vvi18g1383 401 Gene3D Mitochondrial carrier domain 69 231 IPR023395 -
Vvi18g1383 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 196 278 IPR018108 -
Vvi18g1383 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 288 382 IPR018108 -
Vvi18g1383 401 Pfam Mitochondrial carrier protein 203 279 IPR018108 -
Vvi18g1383 401 Pfam Mitochondrial carrier protein 110 191 IPR018108 -
Vvi18g1383 401 Pfam Mitochondrial carrier protein 288 384 IPR018108 -
Vvi18g1383 401 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 86 393 - -
Vvi18g1383 401 MobiDBLite consensus disorder prediction 44 65 - -
Vvi18g1383 401 FunFam protein MITOFERRINLIKE 1, chloroplastic 234 401 - -
Vvi18g1383 401 Gene3D Mitochondrial carrier domain 232 400 IPR023395 -
Vvi18g1383 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 188 IPR018108 -
Vvi18g1383 401 SUPERFAMILY Mitochondrial carrier 106 377 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1383 Vvi-Chr18 14076310 14077515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1383 105 394 EF-hand Containing Proteins AT2G35800 31.894 2.01e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1383 K15111 - vvi:100261505 708.368