Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04342 ATGGAAGCTGTTTGTCTCAAGTGTGGTGATGAAGGTTTTATTGAGGCGATTGTTTTTTGCAACAAGTGTCAGGCTTGTGCTCTGCATAGGTACTGTTTAGATGGACCTGTGATATTTACTGATGATGTTATATGGTTTTGTGAGGATTGTGAACCAAAGGCAGTAGTATCATATTCACTTGACCAATCTACGCCTGTCTCATCTAAAAACACCAACTCTTCAAATTTGGCCAACAATGCAATCCTATCCCAGAGAAAACTGGATTATTGTGTAAAGAGATTGAAGAAAAGCAAACAACAgaataaaaagaagaatgaaGAGAAGCAGAAGAAAGGAAAAGTTAACTCTGTCTTAGTTGCTGAAACAAAGGTCCTTTTATCTGACAGTCGCTGCTCCCCCAAGCTTGAGCATCCTCAATGTAATATCAGCCATGAACaagaaaataaatctaaaagtGATTGTGGAACAGTTCCAACAGATGCAGAAAACTCCAACGTGGATCCTAAATCTGTTCAAATCTCTCAAGTAACTGCGACTGATGATTTAATAACATTAGATACTCCTGTTGATGCACAGCCTATTTCCGATCCAATCTGGAGGGGAGATTTGCTCTTCTGCAATAAAACTATTGGACTTCTGGCCCATTTGTCCAGTTTAGCATCCCCCAAAGTTCGGGAGGAAACAGAACTTTTCCCAGAAGTGCTTTCTGCAGATTTGCCTCCCAGATCAGCTGTGTGGCCTAATAGCTTCAAGAAGGAAGGACCAACTGATAAGAGCATTGCTCTTTATTTCTTTCCCAAGGATAAAAGATTGGCTATAAAGGCCTTTGACATGCTAGTTGATGATATCATTCGCACCGAAGCTGCCGTAAGAGTTGTGACTGAAAATGCAATGCTTTTAATGTTTCCTTCCACCTTGCTTCCAATACAACATCAGAAATTTCAAACCAAGTATTACTTGTGGGGTGTCTTCAAAAAAAAGCAAACTTCAAAAGCGAAATGA 1002 0.3892 MEAVCLKCGDEGFIEAIVFCNKCQACALHRYCLDGPVIFTDDVIWFCEDCEPKAVVSYSLDQSTPVSSKNTNSSNLANNAILSQRKLDYCVKRLKKSKQQNKKKNEEKQKKGKVNSVLVAETKVLLSDSRCSPKLEHPQCNISHEQENKSKSDCGTVPTDAENSNVDPKSVQISQVTATDDLITLDTPVDAQPISDPIWRGDLLFCNKTIGLLAHLSSLASPKVREETELFPEVLSADLPPRSAVWPNSFKKEGPTDKSIALYFFPKDKRLAIKAFDMLVDDIIRTEAAVRVVTENAMLLMFPSTLLPIQHQKFQTKYYLWGVFKKKQTSKAK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04342 333 MobiDBLite consensus disorder prediction 152 169 - -
Tsu01g04342 333 SUPERFAMILY FYVE/PHD zinc finger 2 55 IPR011011 -
Tsu01g04342 333 Coils Coil 91 111 - -
Tsu01g04342 333 ProSitePatterns Zinc finger PHD-type signature. 5 50 IPR019786 -
Tsu01g04342 333 PANTHER - 1 331 - -
Tsu01g04342 333 PANTHER OS12G0161900 PROTEIN 1 331 - -
Tsu01g04342 333 MobiDBLite consensus disorder prediction 141 169 - -
Tsu01g04342 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04342 Tsu-Chr1 51377684 51380566 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04342 - - mtr:MTR_1g099270 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04342 01 51377684 51380566 Tsu01g04342 01 51377684 51380566 ECH
Tsu06g02699 06 34792154 34800052 Tsu01g04342 01 51377684 51380566 PCT