Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04166 ATGGTGTCAGCTAACGACCCAGTTGAGTCCTTTTTCAATTCCATTCAAGTTATGAAGGAATCGCTTTCACCACTTGAAGTGGGTTTTCGTAAGGCGGCGAAGGATTTTGAGCATTGTTTTTCAGGTACAAAGAATAATCGCATTAATGGTGTTTGTTTAATTGCTCAAGTGAAAGATGGTGGTGAATTTCAGATCTGTGAtgttaagaagaaaaaagggtTATCAATGAAGGTTCCTTTGAAGTCCTTTTTGGGTATGTTTTCACAGAATTCAGGAAATGGTAATAATAAAACTCAAGTTGGTAAAGAAAATGAGTCTTCTTGTAGTAATTGTTTGCAATTTTCTGTGACTTGGTCTTTGTTGGTTAGTGGGTTTTTTCAGTCATTGCCAATTCCTTTTAAATCTGGTAAAAAGAGGTTTCAGAAAGTGTGTGATGAAGATAATAATCACAAGGATAAGTGTTCATGCATGAAGCAAACTTTTTCATCATGTGAAGTGAAGCATAATGAGTCTAAGGGTCAATTTGTTAGGACTGTTAAGGAAAAGGTTGTGAAGAGAAAAGATGGAAAACAACATGTTTCACTTGAATGTCTTATAGGTTTTATCTTTGATCAATTGTCTCATACACTTCAGAATATTGATCATGGAATCAATGGAATGCAAGGGAATAATAATGATATTGAGTTTGAGAAAACCTCATTGCATTCAGCTCCTTTTGGTCATGTGAATGCATTTACAAGTTTCTTGGAAGGGCACAAAGTGAATGTGAATGGTTTCTTAGGGAATTTGAATTTTGCAAAGGTGGGTGGTGTGCCATCAAGTGCAGCTGGGGAAGAAATAGCTTCACAAAAGGAAATGGGAGATAGTGATGAAAATAAGGAAGAAAGTGTGGGAATTTCGGCACAGAAGGTTGCCTCGAACATATTCAGCATTCCTTTAACAAATGTGGAGCGTCTAAAGACTACACTTTCAACCGTTTCATTGACTGAGTTGATTGAACTGCTACCGCAGCTCGGGAAAACATCGAAAGACCATCCTGATAAGAAGAAGCTATTCTCTGTACAGGATTTCTTTAGATACACAGAGTCTGAAGGGAGGAGATTCTTTGAGGAGTTAGACAGAGATGGTGATGGTCAAGTAACTTTAGAAGATCTAGAAATTGCAATGAGAAGGAGAAAGCTTCCACGAAGATATGCTAAAGAGTTCATGAGCCGCACTAGAAGTCATTTATTTTCTAGGTCTTTTGGTTGGAAACAATTCTTATCATTCATGGAACAAAAGGAGCCAACAATTCTTCGTGCATACACTTCTTTGTGTTTAACCAAGTCAGGAACGTtgaagaaaagtgaaatattgGAGTCACTAAAGAATTCAGGACTGCCTGCAAATGAAGACAATGCTGTCGCAATGATGCGATTTCTAAATGCAGACACAGAAGAATCTATTTCATATGGACATTTCCGCAATTTCATGCTTCTGCTTCCCTCAGATCGTCTTCAAGAGGATCCTAGGAGTATTTGGTTTGAAGCTGCAACTGTAGTTGCAGTTCCACCATCCGTCGAAATTCCTGCTGGAAGTGTTCTAAGATCTGCATTGGCAGGTGGCCTTTCTTGTGCCCTGTCTTGTGCATTACTGCATCCAGTTGATTCAATCAAGACTCGAGTACAAGCATCAACTATGTCCTTCCCTGAAATAATTGCTAAGCTGCCAGAGATCGGAACACGTGGTTTATACAGGGGTTCAATCCCTGCAATTCTTGGACAGTTTTCAAGCCATGGCCTGCGAACTGGGATATTTGAAGCGAGTAAATTGGTGTTGGTAAATGTTGCTCCGAATTTACATGAACTCCAGGTACAATCTATAGCATCATTCTGTAGCACGTTTTTGGGAACAGCTGTGCGGATACCCTGCGAGGTGTTGAAGCAGAGATTGCAGGCTGGTCTTTTCGACAATGTGGGCGAGGCTTTGGTTGGGACTTGGCGGCAAGATGGTCTTAAGGGGTTTTTTCGTGGAACCGGAGCAACACTTTGTCGAGAGGTTCCATTTTATGTTGCTGGCATGGGGCTTTATGCTGAATCTAAAAAGGGTGTCCAAAAGCTACTTGGACGAGAACTCGAGGCCTGGGAAACAATTGCAGTTGGAGCCTTATCCGGTGGCTTGGCAGCTGTTGTTACGACACCGTTTGATGTCATGAAAACTAGAATGATGACTGCGCAGGGTCGGTCTGTGTCAATGACCTTGGTAGCCATCACTATTCTCCGCCATGAGGGACCCCTTGGTTTATTCAAAGGAGCAGTTCCTAGATTCTTTTGGATTGCTCCTTTAGGTGCCATGAACTTTGCAGGTTATGAGTTAGCAAGGAAGGCcatgaataaaaatgaagagGCCAAGACTGGAAATTTAGACTAA 2409 0.4027 MVSANDPVESFFNSIQVMKESLSPLEVGFRKAAKDFEHCFSGTKNNRINGVCLIAQVKDGGEFQICDVKKKKGLSMKVPLKSFLGMFSQNSGNGNNKTQVGKENESSCSNCLQFSVTWSLLVSGFFQSLPIPFKSGKKRFQKVCDEDNNHKDKCSCMKQTFSSCEVKHNESKGQFVRTVKEKVVKRKDGKQHVSLECLIGFIFDQLSHTLQNIDHGINGMQGNNNDIEFEKTSLHSAPFGHVNAFTSFLEGHKVNVNGFLGNLNFAKVGGVPSSAAGEEIASQKEMGDSDENKEESVGISAQKVASNIFSIPLTNVERLKTTLSTVSLTELIELLPQLGKTSKDHPDKKKLFSVQDFFRYTESEGRRFFEELDRDGDGQVTLEDLEIAMRRRKLPRRYAKEFMSRTRSHLFSRSFGWKQFLSFMEQKEPTILRAYTSLCLTKSGTLKKSEILESLKNSGLPANEDNAVAMMRFLNADTEESISYGHFRNFMLLLPSDRLQEDPRSIWFEAATVVAVPPSVEIPAGSVLRSALAGGLSCALSCALLHPVDSIKTRVQASTMSFPEIIAKLPEIGTRGLYRGSIPAILGQFSSHGLRTGIFEASKLVLVNVAPNLHELQVQSIASFCSTFLGTAVRIPCEVLKQRLQAGLFDNVGEALVGTWRQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKGVQKLLGRELEAWETIAVGALSGGLAAVVTTPFDVMKTRMMTAQGRSVSMTLVAITILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMNKNEEAKTGNLD 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04166 802 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Tsu01g04166 802 ProSiteProfiles Solute carrier (Solcar) repeat profile. 525 605 IPR018108 -
Tsu01g04166 802 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Tsu01g04166 802 SUPERFAMILY Mitochondrial carrier 526 784 IPR023395 -
Tsu01g04166 802 ProSiteProfiles Solute carrier (Solcar) repeat profile. 705 789 IPR018108 -
Tsu01g04166 802 SUPERFAMILY EF-hand 365 495 IPR011992 -
Tsu01g04166 802 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 122 795 - -
Tsu01g04166 802 Gene3D Mitochondrial carrier domain 530 801 IPR023395 -
Tsu01g04166 802 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN-LIKE 122 795 - -
Tsu01g04166 802 Pfam Mitochondrial carrier protein 618 698 IPR018108 -
Tsu01g04166 802 Pfam Mitochondrial carrier protein 705 793 IPR018108 -
Tsu01g04166 802 Pfam Mitochondrial carrier protein 526 606 IPR018108 -
Tsu01g04166 802 ProSiteProfiles Solute carrier (Solcar) repeat profile. 614 696 IPR018108 -
Tsu01g04166 802 Gene3D - 278 431 - -
Tsu01g04166 802 Gene3D - 442 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04166 Tsu-Chr1 49578968 49586134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04166 1 796 EF-hand Containing Proteins AT2G35800 64.656 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04166 - - gmx:100807842 1286.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04166 01 49578968 49586134 Tsu01g04166 01 49578968 49586134 ECH