Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1153 . . . . . . Aed11g0516 . . . Ahy15g1951 . Aip05g02157 . . . . . . . . . . . . . Bva01g01870 Bva11g00878 Car02g00885 Car07g01949 Cca06g00499 . . . Dod02g1800 . . . . . Gma02g01125 Gma01g00641 . . Gso2g1022 Gso2g1022 . . Lal6g0755 . Lal18g0951 . . . Lan11g0765 . Lan11g0765 . . . . . . . . . . . . . . . . . . . . . . . . . Mtr5g1870 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1421 . . Sto6g2898 Tpr4g4733 . . . . . . . . . . . . . . . . .
Vvi1g1154 . . . . . . . . . . Ahy15g1955 . Aip05g02166 . . . . . . . . . . . . . Bva01g01869 Bva11g00877 Car02g00887 Car07g01948 . . . . . . . . . . Gma02g01126 . Gma08g02451 . Gso2g1023 . Gso2g1023 . . Lal22g0666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr5g1872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g2897 Tpr4g4734 . . . Tsu05g02394 . . . . . . . . . . . . .
Vvi1g1155 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1156 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g01866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g2895 . . . . . . . . . . . . . . . . . .
Vvi1g1157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1158 . . . . Adu05g01138 . . . . . . . . . . . . . . . Arst5g01434 . . . . . Bva01g01865 . Car02g00894 . . . . . . . . . . . Gma02g01127 Gma01g00647 . . Gso2g1024 Gso2g1024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal6g2580 . . . . . . . Mtr5g1874 . . . Phco4g00226 . . . . . Pste1g01821 . . . . . . . Pvu2g1700 . Rops1g02266 . . . Spst2g00224 . . . . Sto6g2894 Tpr2g2158 . . . . . . . . . . . . . . . . .
Vvi1g1159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1160 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1151 Chr1 15587023 15619072 -
Vvi Vvi1g1152 Chr1 15641154 15641354 +
Vvi Vvi1g1153 Chr1 15655820 15657742 +
Aed Aed11g0516 Chr11 4565085 4566995 -
Ahy Ahy15g1951 Chr15 101938223 101941748 +
Aip Aip05g02157 Chr05 93833500 93835579 +
Bva Bva01g01870 Chr01 19149200 19152813 -
Bva Bva11g00878 Chr11 11127522 11131056 -
Car Car02g00885 Chr02 13776859 13780239 +
Car Car07g01949 Chr07 22409723 22413576 -
Cca Cca06g00499 Chr06 15176492 15178402 +
Dod Dod02g1800 Chr02 23521306 23523648 +
Gma Gma02g01125 Chr02 12349325 12352377 +
Gma Gma01g00641 Chr01 11031104 11033023 +
Gso Gso2g1022 Chr2 12147423 12150436 +
Gso Gso2g1022 Chr2 12147423 12150436 +
Lal Lal6g0755 Chr6 5030439 5032367 -
Lal Lal18g0951 Chr18 12405630 12408698 +
Lan Lan11g0765 Chr11 6961148 6979924 -
Lan Lan11g0765 Chr11 6961148 6979924 -
Mtr Mtr5g1870 Chr5 21254890 21257909 -
Ssu Ssu2g1421 Chr2 58890898 58892817 -
Sto Sto6g2898 Chr6 36178764 36180695 -
Tpr Tpr4g4733 Chr4 55819967 55824083 +
Vvi Vvi1g1154 Chr1 15664683 15666416 -
Ahy Ahy15g1955 Chr15 102750186 102754343 -
Aip Aip05g02166 Chr05 94536062 94540221 -
Bva Bva01g01869 Chr01 19142584 19144751 +
Bva Bva11g00877 Chr11 11123556 11125449 +
Car Car02g00887 Chr02 13810255 13812896 -
Car Car07g01948 Chr07 22401329 22406535 +
Gma Gma02g01126 Chr02 12366007 12368747 -
Gma Gma08g02451 Chr08 29581978 29585752 +
Gso Gso2g1023 Chr2 12163630 12166904 -
Gso Gso2g1023 Chr2 12163630 12166904 -
Lal Lal22g0666 Chr22 4720817 4724427 +
Mtr Mtr5g1872 Chr5 21297713 21299854 -
Sto Sto6g2897 Chr6 36167841 36172000 +
Tpr Tpr4g4734 Chr4 55828358 55832727 -
Tsu Tsu05g02394 Chr05 31991682 31994455 +
Vvi Vvi1g1155 Chr1 15681094 15683279 +
Vvi Vvi1g1156 Chr1 15701474 15704472 +
Bva Bva01g01866 Chr01 19130192 19133502 -
Sto Sto6g2895 Chr6 36153977 36162882 -
Vvi Vvi1g1157 Chr1 15714046 15716744 +
Vvi Vvi1g1158 Chr1 15722218 15723982 +
Adu Adu05g01138 Chr05 15843029 15844497 +
Arst Arst5g01434 Chr5 15893517 15895147 +
Bva Bva01g01865 Chr01 19127306 19129507 +
Car Car02g00894 Chr02 13966922 13974612 -
Gma Gma02g01127 Chr02 12382263 12385045 -
Gma Gma01g00647 Chr01 11182467 11185580 -
Gso Gso2g1024 Chr2 12180212 12183099 -
Gso Gso2g1024 Chr2 12180212 12183099 -
Mal Mal6g2580 Chr6 64075359 64079407 -
Mtr Mtr5g1874 Chr5 21328433 21331365 -
Phco Phco4g00226 Chr4 1422042 1424020 -
Pste Pste1g01821 Chr1 5591014 5593855 -
Pvu Pvu2g1700 Chr2 30667887 30669734 +
Rops Rops1g02266 Chr1 44762680 44764997 +
Spst Spst2g00224 Chr2 1705250 1708944 -
Sto Sto6g2894 Chr6 36150315 36152245 +
Tpr Tpr2g2158 Chr2 25846623 25848392 +
Vvi Vvi1g1159 Chr1 15732427 15732945 -
Vvi Vvi1g1160 Chr1 15747037 15747252 -
Adu Adu05g01138 Chr05 15843029 15844497 +
Arst Arst5g01434 Chr5 15893517 15895147 +
Phco Phco4g00226 Chr4 1422042 1424020 -
Pste Pste1g01821 Chr1 5591014 5593855 -
Pvu Pvu2g1700 Chr2 30667887 30669734 +
Rops Rops1g02266 Chr1 44762680 44764997 +
Spst Spst2g00224 Chr2 1705250 1708944 -