Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1151 ATGGCGATTACTGCTTCCGTGTCCTTTCTTTCCCCTTCCCCCTCCCGTCTTTTCTGCCTGCAAAACCATAATCCTCTCTCTCAACCATTATTCTCTCTTCCATTTCACTCTCACGCCTTCCTCACCTTTGCTTCCCCTCAAAAACGCCTCAAACCCACTGCCATTCCCAAGAACATAACACCAAGCGCACAAGCTTCCAATGACTCTGCGCCAATGCTTCCTCCTTACAACGTTTTAATCACTGGTTCCACAAAAGGAATAGGTTTTGCACTAGCTAGGGAGTTTCTTAAAGCAGGTGATAATGTCATAATTTCCTCAAGATCAGCTGAACGGGTGGAATCTTCTGTTGAGAGCTTAAGAAGGGAATTTGGGAAGCACCATGTGTGGATTAATAATGCAGGATCAAATGCATATAGTTACAAACCACTGGCAGAAGCTTCAGATGAAGATCTTATTGAAGTTGTTACCACTAACACCCTTGGTTTGATGATTTGCTGTCGAGAGGCAATAAAGATGATGTTGAACCAGCCTCAAGGGGGTCATATTTTCAACATTGATGGGGCTGGTTCAGATGGAAGACCAACCCCCAGATTTGCGGCATATGGTGCGACAAAACGCAGTGTGGTTCATTTAACAAAATCATTACAGGCTGAATTGCAAATGCAAGATGTTAAAAACGTGGTAGTACATAATCTTTCGCCAGGAATGGTCACCACTGATCTTCTCATGTCGGGTGCCACTACAAAACAGGCCAAGTTTTTCATTAATGTTTTGGCAGAACCAGCAGAAGTGGTTGCAGAATACCTTGTTCCAAACATCAGATCTATCCCTGTCAATGGATCAACAAAGCCTACTTATATTCGTTTCCTCACCGGGTTGAAAGCCTATTCACAGATATTCTCAAGATTCGCATTTGGTGCAAGAAGAAACAGATATCTTCTTGAAGATTGA 951 0.4311 MAITASVSFLSPSPSRLFCLQNHNPLSQPLFSLPFHSHAFLTFASPQKRLKPTAIPKNITPSAQASNDSAPMLPPYNVLITGSTKGIGFALAREFLKAGDNVIISSRSAERVESSVESLRREFGKHHVWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMLNQPQGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVPNIRSIPVNGSTKPTYIRFLTGLKAYSQIFSRFAFGARRNRYLLED* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1151 316 CDD SDR_c 78 282 - -
Vvi1g1151 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 268 IPR036291 -
Vvi1g1151 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Vvi1g1151 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 201 220 IPR002347 -
Vvi1g1151 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Vvi1g1151 316 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 188 216 IPR020904 GO:0016491
Vvi1g1151 316 Pfam short chain dehydrogenase 113 244 IPR002347 -
Vvi1g1151 316 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Vvi1g1151 316 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Vvi1g1151 316 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Vvi1g1151 316 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Vvi1g1151 316 PRINTS Glucose/ribitol dehydrogenase family signature 77 94 IPR002347 -
Vvi1g1151 316 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 70 127 - -
Vvi1g1151 316 Gene3D - 76 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1151 Vvi-Chr1 15587023 15619072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1151 34 241 Acyl Lipid Metabolism Gene Families AT1G24360 23.868 7.42e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1151 K13606 - vvi:100265035 599.742