Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01866 ATGCTCAACCACATCCGCCAATGGATGCCCCATAATTTTCCTCGAAAAATTCGAAGTCTTTGTCCTCTCATCAAGCCTATTTTCACTGAATCCAATGTTTCTGCTGCGAACCTAGAAGAGGTGCCTGCCACTGCCTCCATCGTTCCTACCCCTGCTGACCCAGTTCGTGAAATTCTTATTGGTTTGAAGAATTTCGGTTTCAGAAATTTCCTTGGTGGGAGTTATTTTATTACCCTTTATTCGACATTGAATCAAGCTCAGGTGGATCAAATTGTCGATAATTTGAGGAGAGAGAACTCGGATTCTGCACTGgttttctttgatattttgagGAATGAATATGGGTTTCGGCATTCCAGGGATACCTATTTCGTTGTTGCTCATATTTTTGCAAGCAAAAGGCGGTTCAAGGACTTGCAATTGGTTATAAATCAAATGCTGGAACAGGAAGGTTCTGGTCCTGCACTCTTACTTTGTGAGCTGCTCTCGAACAACTTCAGGGAGTGGGACTCAACTAATGTGGTATGGGATACATTGGCTTTTGCTTATTCAAGAAATGAGTTTGTTCATGATGCCCTCCTTGTTCTGGCCTATATGAAAGACTTAAGTTTGCAAGCTTCAATACCAACCTATAACAGCTTGTTGTACAATTTAAGGCATACTGATATGATGTGGGATGTATATCATGAAATTAGAGATAGTGGGACTCCTGAAAATGAGTGGACTAACTCTATACTCATAGATGGTCTTTTCAAACAAGCTAAGTTTCAAGatgctcttttatttttgtggaaGCCCAAGAGGAAAGGACTTGGCCCTTCCATTGTTTCCTTCAATACCGCTATGTCAAGATTCTGTGAATTGGGTTTTGTAGATGTAGCAAAATCTTTTTTCTGTATAATATTCAAGCAAGGTCTACTTCCTGATGCATATAGTTACAACATTCTAATTCATGGACTTTGTTTAGCTGGTTCCATGGATGAAGCTCTAGATTTCAGAGAAGAAATGGAGAAGCAAGGTCTACAGCCAGATATAGTAACCTATAATATTCTTGTCAAagggtttcttcttcttggctTAACCAGTGGAGCTTGGCAGCTTATTCAGGAAATGATGCTTAAAGGGTTAAATCCAGATGTTGTTACatatacaatattaatatGTGGCCATTGCCGGATGGGCAACGTTGAGGAAGGCATGAAGTTGCTGGAGGAGATGCTTTCTCGTGGTTGTGAATTGAGTCTCATTTCATGCAGTGTATTGCTTAGTAGTTTGTGCAAAAGGGGATGTGTTAATGAAGCACTAAGACTACTCCACCAAATGGAAACTTTAGGCCTGAAACCAGATCTCATAACATATTCTATCCTAATCCACGGGCTCTGCAAGCTTGGAGAAATCCAAACAGCTTTACAATTATACAAGGAAATGTGCTTAAATAGAATATTTCCTAATTCTTTTACTCACAGTTCTTTCTTGTTGGCAATGTGTGAAAATGGCACATTGAGTGAGGCAAGAAATTATTTCGATATTCTAACAAGCAGTATGCCGgaaaatatagtgttttataatataatgattgaCAGATATGTTAAGGTTGGTAAGACTGAGGAAGCTGTACAGTTGTACAATACAGTTATTGAGAAAGGAATTGCACCTACTATTGTTACTttcaattctttaatttatggATTCTGCAAGAACAGAAACCTAGAAGAGGCAGGACGGTTGTTTGAAATCATAAAGCTGCATGGAATTTTGCCAAATGTAGTAACTTATACCATTCTTATGAATGCGTTATGTGAAGAGGAAAACATACAAGCTATGCTTGGATTACTCCAAGAGATGGAAGCAAAAGCTGTAGAACCGACTCATATCACTTATACTGTAGTTATCAAAGGACTTTGCAAACATTGGAGGCTGCACGAATCCCTTCAGGTGCTTAATGATATGTATTCTAAGGGTTTATATCCAGATCAAATCACGTACAATACCATCATTCATTGTTTCTGCAAAGCTCACCACATCAAGAAGGCTTTTCAAATGCTTGGTGAGATGCTAATGCATAAACTAGAGCCTACTCCTGCAACATATAATGTGTTGATCAATGGTCTGTGCATTAATGGTGATCTAGCACATGCTGATGGACTACTAGTCTCTCTTGAAGATCAAAACATTTGTTTGACCAAAGTCGCTTACACCACAATGATCAAAGCACATTGTGCTAAAGGCGATGTAGGCAGGGCAGTACTATTCTTTCATAAAATGGTTGAAAAGGGATTTCCAGTCTCAATTTGTGATTATAATGCTGTAATCAATAGATTATGCAAAAGGCATTTTGTTACTAAAGCCAAGTATTTCTTTTGTATGATGTTATCTGATGGAATTCATCCTGATGAAGAAATTTGCAGAATGATGCTCAAGGGATTCCTTGAAAGCGATGATCAGGATTCAGTTTCAGAATTACTTGCTCAGATGATTAAAACTGGTTTACTTCCTGATTA 2501 0.3703 MLNHIRQWMPHNFPRKIRSLCPLIKPIFTESNVSAANLEEVPATASIVPTPADPVREILIGLKNFGFRNFLGGSYFITLYSTLNQAQVDQIVDNLRRENSDSALVFFDILRNEYGFRHSRDTYFVVAHIFASKRRFKDLQLVINQMLEQEGSGPALLLCELLSNNFREWDSTNVVWDTLAFAYSRNEFVHDALLVLAYMKDLSLQASIPTYNSLLYNLRHTDMMWDVYHEIRDSGTPENEWTNSILIDGLFKQAKFQDALLFLWKPKRKGLGPSIVSFNTAMSRFCELGFVDVAKSFFCIIFKQGLLPDAYSYNILIHGLCLAGSMDEALDFREEMEKQGLQPDIVTYNILVKGFLLLGLTSGAWQLIQEMMLKGLNPDVVTYTILICGHCRMGNVEEGMKLLEEMLSRGCELSLISCSVLLSSLCKRGCVNEALRLLHQMETLGLKPDLITYSILIHGLCKLGEIQTALQLYKEMCLNRIFPNSFTHSSFLLAMCENGTLSEARNYFDILTSSMPENIVFYNIMIDRYVKVGKTEEAVQLYNTVIEKGIAPTIVTFNSLIYGFCKNRNLEEAGRLFEIIKLHGILPNVVTYTILMNALCEEENIQAMLGLLQEMEAKAVEPTHITYTVVIKGLCKHWRLHESLQVLNDMYSKGLYPDQITYNTIIHCFCKAHHIKKAFQMLGEMLMHKLEPTPATYNVLINGLCINGDLAHADGLLVSLEDQNICLTKVAYTTMIKAHCAKGDVGRAVLFFHKMVEKGFPVSICDYNAVINRLCKRHFVTKAKYFFCMMLSDGIHPDEEICRMMLKGFLESDDQDSVSELLAQMIKTGLLPD 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Bva01g01866 833 Gene3D Tetratricopeptide repeat domain 80 218 IPR011990 GO:0005515
Bva01g01866 833 Gene3D Tetratricopeptide repeat domain 410 506 IPR011990 GO:0005515
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 693 727 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 658 692 IPR002885 -
Bva01g01866 833 Gene3D Tetratricopeptide repeat domain 335 409 IPR011990 GO:0005515
Bva01g01866 833 Gene3D Tetratricopeptide repeat domain 617 687 IPR011990 GO:0005515
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 763 797 IPR002885 -
Bva01g01866 833 SUPERFAMILY TPR-like 379 697 IPR011990 GO:0005515
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 798 832 IPR002885 -
Bva01g01866 833 Pfam PPR repeat 445 476 IPR002885 -
Bva01g01866 833 Pfam PPR repeat 305 337 IPR002885 -
Bva01g01866 833 Pfam PPR repeat 340 371 IPR002885 -
Bva01g01866 833 Pfam PPR repeat 620 650 IPR002885 -
Bva01g01866 833 Gene3D Tetratricopeptide repeat domain 219 334 IPR011990 GO:0005515
Bva01g01866 833 Gene3D Tetratricopeptide repeat domain 510 616 IPR011990 GO:0005515
Bva01g01866 833 Pfam PPR repeat 276 303 IPR002885 -
Bva01g01866 833 Pfam PPR repeat 730 760 IPR002885 -
Bva01g01866 833 Pfam PPR repeat 767 795 IPR002885 -
Bva01g01866 833 Pfam PPR repeat 520 550 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Bva01g01866 833 Pfam PPR repeat family 552 600 IPR002885 -
Bva01g01866 833 Pfam PPR repeat family 378 427 IPR002885 -
Bva01g01866 833 Pfam PPR repeat family 657 705 IPR002885 -
Bva01g01866 833 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 24 831 - -
Bva01g01866 833 Gene3D Tetratricopeptide repeat domain 710 833 IPR011990 GO:0005515
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 728 762 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Bva01g01866 833 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 24 831 - -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 381 414 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 625 658 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 311 345 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 696 727 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 555 589 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 346 380 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 416 449 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 730 763 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 521 553 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 660 693 IPR002885 -
Bva01g01866 833 TIGRFAM PPR: pentatricopeptide repeat domain 767 799 IPR002885 -
Bva01g01866 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01866 255 833 Glycosyltransferase AT1G05670 26.758 1.33e-75 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01866 - - jre:108984477 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01866 01 19130192 19133502 Bva01g01866 01 19130192 19133502 ECH