Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1156 ATGCTCAACCACATCTATCCATGGAGGTCTTTACTCCGAAAATCTCTCAACCTCAGCCCCATCACTTCCCTCGGCTTCACCAAACACTCAGTCTCTGCCGCCAAGCTCCATGATGAGTCCGCCGACGCCTCTATCCCTAATGACGCCGTTCGCCAAATCCTCATTGGTTTAAGAAGCTTTGGTGCTTCTAAGTTTCTCTGGGGGCATCATTTCCAAACCCTAGCTTCGGTACTGAATACCCATCAGGTTGATCAAATTCTCCTTAGTTTGAGAGTCGATAACTCCGACTCTGCGCTTTTTTTGTTTGATTTATTAAGAAATGAGTATGGATTTCGGCATTCTAGGGTTTCCTGGTTCATTGTTTCGCATGTTGTGGCCCGAAAAGGACAGTCCAAGGAGTTGCGCCGCGTTTTAAACCAAATGGTGGAAGAAGAAGGTTCTGGGTCTGCGCCTTCCCTTTGTGAGCTTCTGTGTAATAGCTTCAGGGACTGGGATTTGAATAATGTGGTATGGGATATGCTGGCTTGTGCTTATTCAAGGGCTGAGATGGTTCATGATGCCCTTTTTGTTCTTGCTAAGATGAAAGTCCTGAACTTGCAAGTTTCAATAGCAACCTACAACAGTTTGTTGTACAACCTTAGGCACACTGATATTATGTGGGACGTCTATAATGAAATCAAAGCAAGTGGGGTTCCACAGAATGAGTACACAAATCCCATCCTTATAGATGGTCTGTGCAGGCAGTCCAGGCTACAAGATGCAGTAACTTTCTTGAGGGAGACCGGGGGGGAAGAGTTTGGGCCTTCTGTTGTTTCATTCAATGCCCTCATGTCAGGGTTTTGTAAAATGGGTTCTGTGGATGTTGCAAAGTCATTTTTCTGCATGATGATTAAATATGGATTACTTCCTGATGTGTATAGTTACAATATTCTTCTTCATGGGCTATGTGTAGCAGGTTCTATGGAAGAAGCATTAGAGTTTACAAATGACATGGAGAATCATGGAGTGGAACCTGATATAGTTACCTATAACATTCTTGCTAATGGTTTTCGCATACTTGGTTTGATAAGTGGGGCTTGGAAGGTTGTTCAGAGAATGCTGCTTAATGGGTTAAATCCAGATCTCGTTACATATACAATACTGATCTGTGGGCATTGCCAGATGGGCAATATTGAAGAAAGCTTTAAGTTGAAGGAGAAAATGCTTTCACAAGGTTTAAAGTTGAGTATTGTCACATACACTGTATTGTTAAGCAGTTTGTGTAAGAGTGGACGAATTGATGAAGCAGTGATATTGCTTCATGAAATGGAAGTTATTGGCTTGAAGCCAGATCTTTTAACATATTCTCGAGGGGCAGTAGAAGAGGCTATTGAACTATATGAGGAAATGTGCTCCAAGAGAATTTACCCAAATTCTTTTGTATGCAGCGCTATTATATCAGGTCTTTTTGAAAAAGGGGCAATTTCAGAGGCACAAATGTATTTTGATTCAGTAACAAAGAGTGATGTGGCAGAGGAAATCATTTTGTACAATATTATGATTGATGGGTATGCAAAACTTGGTAATATTGGGGAAGCTGTACGGTCATACAAACAGATAATCGAAAAAGGAATTTCTCCAACTATTGTGACTTTCAATTCCCTTATTTATGGTTTCTGCAAAAAGGGAAAGCTAGCTGAGGCTGTAAAGTTATTAGATACTATCAAGGTGCATGGTTTGGTGCCAACTTCTGTAACTTACACGACTCTAATGAATGGATACTGTGAAGAGGGAGATATGCATAGCATGTTTGACATGCTTCATGAAATGGAAGCAAAAGCTATAAAACCTACTCAAATCACTTATACTGTAGTTGTGAAAGGACTCTGCAAAGAGGGGCGGCTGCATGAATCTGTTCAATTACTCAAGTATATGTATGCTAGGGGTCTATTCCCAGATCAAATCACATATAATACTGTAATTCAAAGCTTCTGCAAAGCTCATGACCTACAAAAAGCTTTTCAGTTACACAATCAAATGTTACAGCATAGTCTTCAGCCTAGTCCTGTTACATATAATGTTCTTATTAATGGCCTTTGTGTATATGGCAACTTAAAGGATGCTGATAGACTACTGGTTACTCTTCAGGACCAAAGTATAAGATTAACAAAGGTTGCCTACACAACAATAATCAAAGCACATTGTGCTAAGGGTGATGTACAGAATGCACTGGTCTTCTTCCATCAAATGGTGGAGAGGGGTTTTGAGGTTTCCATCAGAGATTATAGTGCTGTGATCAATAGATTGTGCAAAAGGAATTTAATAACTGATGCAAAATTTTTTTTCTGTATGATGTTAACTCATGGCATTCCTCCTGATCAAGATATTTGTTTGGTGATGCTCAATGCTTTCCATCGAAGTGGTGATCCCAATTCAGTATTTGAGATATTTGCTATGATGATAAAATGTGGCCTGCTTCCTGTTTAA 2466 0.4002 MLNHIYPWRSLLRKSLNLSPITSLGFTKHSVSAAKLHDESADASIPNDAVRQILIGLRSFGASKFLWGHHFQTLASVLNTHQVDQILLSLRVDNSDSALFLFDLLRNEYGFRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEGSGSAPSLCELLCNSFRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLPV* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 751 785 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 786 820 IPR002885 -
Vvi1g1156 821 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 507 659 - -
Vvi1g1156 821 Pfam PPR repeat family 645 693 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat family 718 764 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat family 575 624 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat family 373 422 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat family 268 316 IPR002885 -
Vvi1g1156 821 Gene3D Tetratricopeptide repeat domain 215 262 IPR011990 GO:0005515
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vvi1g1156 821 Gene3D Tetratricopeptide repeat domain 712 820 IPR011990 GO:0005515
Vvi1g1156 821 Gene3D Tetratricopeptide repeat domain 263 354 IPR011990 GO:0005515
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vvi1g1156 821 Gene3D Tetratricopeptide repeat domain 355 449 IPR011990 GO:0005515
Vvi1g1156 821 Gene3D Tetratricopeptide repeat domain 594 711 IPR011990 GO:0005515
Vvi1g1156 821 Gene3D Tetratricopeptide repeat domain 69 214 IPR011990 GO:0005515
Vvi1g1156 821 Gene3D Tetratricopeptide repeat domain 450 502 IPR011990 GO:0005515
Vvi1g1156 821 Gene3D Tetratricopeptide repeat domain 503 593 IPR011990 GO:0005515
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat 169 197 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat 341 371 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat 792 818 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat 451 467 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi1g1156 821 Pfam PPR repeat 536 567 IPR002885 -
Vvi1g1156 821 SUPERFAMILY HCP-like 451 567 - -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 376 409 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 718 751 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 411 444 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 683 714 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 578 611 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 341 374 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 306 340 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 271 305 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 648 681 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 543 576 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 755 786 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 613 646 IPR002885 -
Vvi1g1156 821 NCBIfam pentatricopeptide repeat 509 541 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Vvi1g1156 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1156 388 820 Glycosyltransferase AT1G05670 26.959 4.68e-52 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1156 - - vvi:100256494 1635.16