Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2895 ATGCTCACCCGCATCCATAAATGGAAACCCTACCATTTTTCACGAAATTCTGCGTGCCTTTGTCCCCTCGCCAACTCCATTTTCACCAAACCCTCAGTCTCTGCTTCGAATGTTGAAGAGGAGCGGGAGCCTATGGTTCCTAGTTGTTCCGATCCAGTTCGTGAGGTTCTCGCTGGTTTGAGGAATTTCGGTTTTGTGAATTTCCTTCGCGGCGAGTATTTTCGTTCGGTGTTTTCGACATTGAATCAGCAGCAGGTGGATCGAATTATCGATTGTCtgaggagagagagttcggaTGATGCTGCGTTGTTCTTCTTTCATGCTTTGAGGAATGAGTATGGGTTTCGGCACTCCAAGGATTCCCAATTTGTTGTTGCGCATGTTTTTGCGAGCACGAGGCGGTTTAGGGACCTGCAGTTAGTCATTCAGCAAATGATCGATCAGGAAGGTTGTGGTTCTGCGCCCTTACTGTGTGAGCTGCTATTAGACAATTTCAGAGACTGGGATTCAAATAGTGTGGTATGGGATACATTAGCTTTTGCTTATTCAAGATATGAGATGGTTAATGATGCCCTCCTTGTTTTGGCCTATATGAAAGACTTAAATTTTCAAGCTTCAATACCAACCTATAATAGCTTGTTGCATAATTTAAGGCGTACTGACATGCTAtgggatatttataataaaatgagagaTAATGGGATTTCTGAAAATGAGTATACTGACTCTATACTTACAGATGGGCTATGTGAACAAGCCGGGCTACAAGATGCAGTTTTATTTTTGCAGAAGCCTAAAGTGAATGGAGTTGGCCCTCCTATTGTTTCCTTTAATACAATTATGTCAAGATTTTGTAAATTGGGTTTAGTAGATGAGGCAAAATCTTTATTCTGTATGATGCTTAAGCAAGGTCTACATCCTGATGCATATAGTTACAATATCCTAATTCATGGTTTGTGTATAGCTGGTTCCATAGAGGAAGCTGTAAATTTTACAGACCAGATGGAAAATGAAGGGCTAAAGCCAGATATAGTAACATACAACATTCTTGTCAAAGGGTTTCTTTTACTTGGTTTAATGAGAGGAGCTTGGCAGCTCATTCAGAAAATGATGCTGACGGGGTTAAGTCCAGATGTTGTTACATATACAATACTAATTTGTGGTCATTGCCGGTTAGGCAATATTGATGAAGGCTTGAAGTTGCTAGAGGAGATGGTTTCTCTGGGATGTCAGTTGAGTTTCATTCCATATAGCATATTGCTCAGTAGTTTGTGCAAATGTGGACGTGTTAAGGAGGCACTAATATTGTTCGATGATTTAAAAACTTCGGGCCTGAAACCAGATCTTATAACATATTCTATCTTGATTCATGGGCTTTGTAAGCTAGGAGAAATCCAAAGTGCTTTACAATTATATGACGAGATCTGCTCAAACAAAATCTTGCCAAATTCATTCACTCATAGTTCGTTTTTGTTAGCTGTGTGTGAATATGGAACAATAAGGGAGGCAAGAAAGTGCTTTGATGTGCTAACAAGAAGTGAACCGCAAAATAtagttttttataatattatgatTAACAGATATGTAAAGGTTGGCAATATTGGGGAAGCTGTACAGTTGTACAAAAGTGTTATTGAGAAGGGAATTTCTCCTACAATTGTTACCTTCAATTCTCTAATTTATGGATTCTGCAAGAATAAAAACCTAGAAGAGGCTAGacaattgtatgaagccattaGACAACATGGGCTTTTGCCAAGTACAGTAACTTATACCATTCTTATGAATGCATTATGTGAAGAGGGATGTATGCAAGGCATGATTAAATTGCTCCAGCAGATGGAAGCAAATGATGTTGTTCCAACACACATCACTTATACTGTAGTTATCAAAGGTCTTTGCAAACATGGGAGGCTGAATGAATCCCTCCAAGTGCTTAACAATATGTACATTAAGGGTTTACATCCAGATCAAATTACATACAATACCATCATCCAGAGTTTCTGTAAAGCTCACAACATGATAAAAGCTTTTCAATTGGTTGGTAAGATGATAATGCATAAACTGGAGCCTACTCCCGCAACATATAATGTGTTGATCAATGGCCTTTGCATTAATGGTAGGCTAGAATATGCTGATAGACTGCTAACTTGTCTTGAAGATCAGAACGTCTGTTTGTCGAAAGTTGCTTATATGGTAATGATAAAAGCACACTGTGCAAAAGGGGATGTACACAGGGCAGTACTATTCTTCCATAAAATGGTTGAAAAgcaatttcaaatttcaatcaaTGACTATAGTGCTGTAATTAATAGATTGTGCAAAAGACGTATTATTACTAAAGCAAAGTATTTCTTTTCTGTGATGTTATCTAATGGCATTGGTCCTGATGAAAAACTTTGCAAAACAATGCTCATTGCATTTTATAAAAGTGGTGATCAGGGCTCAGTTTCAGAACTACTTGCTGAGATGATTAAAACTGGTTTACTTTCTCTGATAATCAATGAAATCCCTACTTGCATTCCATTGGGCTCTCTAATTGGATCTATTCACAAATGA 2559 0.3701 MLTRIHKWKPYHFSRNSACLCPLANSIFTKPSVSASNVEEEREPMVPSCSDPVREVLAGLRNFGFVNFLRGEYFRSVFSTLNQQQVDRIIDCLRRESSDDAALFFFHALRNEYGFRHSKDSQFVVAHVFASTRRFRDLQLVIQQMIDQEGCGSAPLLCELLLDNFRDWDSNSVVWDTLAFAYSRYEMVNDALLVLAYMKDLNFQASIPTYNSLLHNLRRTDMLWDIYNKMRDNGISENEYTDSILTDGLCEQAGLQDAVLFLQKPKVNGVGPPIVSFNTIMSRFCKLGLVDEAKSLFCMMLKQGLHPDAYSYNILIHGLCIAGSIEEAVNFTDQMENEGLKPDIVTYNILVKGFLLLGLMRGAWQLIQKMMLTGLSPDVVTYTILICGHCRLGNIDEGLKLLEEMVSLGCQLSFIPYSILLSSLCKCGRVKEALILFDDLKTSGLKPDLITYSILIHGLCKLGEIQSALQLYDEICSNKILPNSFTHSSFLLAVCEYGTIREARKCFDVLTRSEPQNIVFYNIMINRYVKVGNIGEAVQLYKSVIEKGISPTIVTFNSLIYGFCKNKNLEEARQLYEAIRQHGLLPSTVTYTILMNALCEEGCMQGMIKLLQQMEANDVVPTHITYTVVIKGLCKHGRLNESLQVLNNMYIKGLHPDQITYNTIIQSFCKAHNMIKAFQLVGKMIMHKLEPTPATYNVLINGLCINGRLEYADRLLTCLEDQNVCLSKVAYMVMIKAHCAKGDVHRAVLFFHKMVEKQFQISINDYSAVINRLCKRRIITKAKYFFSVMLSNGIGPDEKLCKTMLIAFYKSGDQGSVSELLAEMIKTGLLSLIINEIPTCIPLGSLIGSIHK 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Sto6g2895 852 Gene3D Tetratricopeptide repeat domain 493 602 IPR011990 GO:0005515
Sto6g2895 852 Gene3D Tetratricopeptide repeat domain 69 216 IPR011990 GO:0005515
Sto6g2895 852 Gene3D Tetratricopeptide repeat domain 603 723 IPR011990 GO:0005515
Sto6g2895 852 Gene3D Tetratricopeptide repeat domain 724 836 IPR011990 GO:0005515
Sto6g2895 852 Gene3D Tetratricopeptide repeat domain 217 334 IPR011990 GO:0005515
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Sto6g2895 852 Pfam PPR repeat family 417 461 IPR002885 -
Sto6g2895 852 Pfam PPR repeat family 656 704 IPR002885 -
Sto6g2895 852 Pfam PPR repeat family 729 775 IPR002885 -
Sto6g2895 852 Pfam PPR repeat family 551 599 IPR002885 -
Sto6g2895 852 Pfam PPR repeat family 274 320 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 762 796 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Sto6g2895 852 SUPERFAMILY HCP-like 384 583 - -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Sto6g2895 852 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 20 830 - -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 692 726 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Sto6g2895 852 Pfam PPR repeat 618 649 IPR002885 -
Sto6g2895 852 Pfam PPR repeat 374 406 IPR002885 -
Sto6g2895 852 Pfam PPR repeat 339 370 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 450 483 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 659 692 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 729 760 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 589 622 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 554 587 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 624 657 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 520 552 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 417 448 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 275 309 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 380 412 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 766 798 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Sto6g2895 852 TIGRFAM PPR: pentatricopeptide repeat domain 695 716 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Sto6g2895 852 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 20 830 - -
Sto6g2895 852 Pfam PPR repeat 519 549 IPR002885 -
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Sto6g2895 852 Gene3D Tetratricopeptide repeat domain 335 407 IPR011990 GO:0005515
Sto6g2895 852 Gene3D Tetratricopeptide repeat domain 408 477 IPR011990 GO:0005515
Sto6g2895 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2895 430 835 Glycosyltransferase AT1G05670 25.178 1.96e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2895 - - jre:108984477 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2895 6 36153977 36162882 Sto6g2895 6 36153977 36162882 ECH