Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0890 ATGGCCGGAAATAGCCCCACCGCCATCACGCATATACCCGATGAGATCCTTACCAACGTATTCTCCGCCATATCCGACACTCGCTCCCGAAACTCCCTCTCCCTCGTCTGCCGGAGCTTCCGCCGTCTCGAGAGGAAGACCCGCACCTCCCTCACTCTCCGTGGCAACGCGCGCGACCTTCACTTGATTCCTACCTGCTTCAGCTACGTCACAGACCTTGACCTCTCCCTCCTCTCCCCTTGGGGCCATGGCCTTTTCTCCTCCTCTTCCTACTCCGATCCTGGCCTCCTCGCTCTCCATCTACGCGACGCTTTCCCTCGTGTGACGTCGCTCACCGTCTATGTTCGCTCGCCGACTACGCTCCAACTGCTGCTTCTTGTTCCGTGGCCGGAATTGCGCCACGTCAAGCTCGTCCGGTGGCATCAACGGCCGGCGTCTGCGCCGGGGTCCGACTTCGCCGTGTTACTCGAGAAATGCAAATCGCTGTCGTCGTTGGACCTCTCCAGCTTCTACCACTGGCCCGAGGATCTCCCTCCGGTTCTGCTGGCTAATCCGGTTACGGCAGCCTCGTTGAAGAGGCTGAACCTCTTGACAACGTCGTTTACGGAGGGGTTCAGAGCTCATGAAATCCATTCCATCACAGCTGTTTGCCCCAACCTTGAGCAGTTTTTGGTAGCTTGCACCTTTGATCCAAGGTACCATGGTTATGTGGGAGATGAAGCTCTGTTGGCTATCGCTTCTAATTGTCCTAAGCTTTCACTTCTTCATCTCGCTGATACGTCGTCGTTGGCGAACCGGAGGGGTGATCCTCTGGACGAGGGGTTCACCGCCGAGGATGCTAGGATCAGCCGTACAACACTGGTCGAGTTTTTTTCTGGATTGCCCCTGCTGGAAGAGTTGGTGCTAGATGTTTGTAAGAATGTCAGAGATAGTAGTTTTGCCTTGGAAGTGCTGAATTCCAAATGCCCCAAGTTGAAGGTGCTCAAGTTAGGCCAGTTTCATGGGATTTGCCTGGCCATCGGGTCACAGCTTGATGGGATTGCTCTTTGCCAAGGACTCCAATCTTTGTCCATAAAAAACTGTGCAGACTTGACGGACATGGGGTTGATAGAGATTGCCAGAGGATGTTCAAGACTGGTTCAATTTGAGGTACAGGGATGCAAACATATCACGGAGAAAGGGTTGAGGACGATGACATGTCTACTTCGCAAGACTCTGATCGATGTTAAGATTTCTTGCTGTTTGAATCTTGACACTGCTGCGTCTCTGAGAGCTTTGGAGCCCATTCGCGATCGGATTGAGCGGCTTCACTTGGATTGCGTGTGGAATGGCTTGAGAGAAACTGATAATCTGGGGCAAACCATCCTCGATGTTGACCTCAATAGTCTGGATGAACCACGTTCTTCAAACTTGAAGACTGCTGATTTCGTGGATTACTTTGGGAGTACAGAATACGAAGACACAAGCAGAAGGAAGAGGCAGAGATACAATTATTCATCAGAGGCTGATTGCAGCAATGGCTACTGGTGCAACAGCTGGGACAGGTTGCGATATCTCTCTCTCTGGATAGGAGTTGGTGAGCTGCTGACTCCATTGCCAATGGCAGGTCTGGAAGAATGCCCCAACTTGGAAGAGATTCGTATAAAGGTGGAAGGAGATTGCAGAGGGCGACCCAAACCATCCGAGCGCGAATTCGGGTTGAGCATTCTTACTTGTTATCCTCAGCTGACAAAGATGCAGTTGGATTGTGGTGAAACAAGAGGTTATGCACTGACAGCACCATCAGGGAAGATGGATTTGAGCCCGTGGGAGAGGTTCTTCCTGAATGGTATTGGCACTTTGAGTCTGAATGAACTTGATTACTGGCCACCTCAAGATGAAGATGTGAACCAAAGGAGCCTATCACTTCCAGCTGCTGGATTGCTCCAAGAATGTGATACTCTGAGGAAACTCTTCGTTCATGGGACAGCTTATGAACATTTCATGATGTTTTTCCTGAAGATTCGAAATCTTAGGGATGTGCAGCTGAGGGAGGATTATTATCCAGCACCAGGGAATGACATGAGTACAGAGATGAGGGTGGGTTCATGCAGCCGCTTTGAAGATGCTTTAAACAGGCGTCAAATTTATGATTGA 2136 0.508 MAGNSPTAITHIPDEILTNVFSAISDTRSRNSLSLVCRSFRRLERKTRTSLTLRGNARDLHLIPTCFSYVTDLDLSLLSPWGHGLFSSSSYSDPGLLALHLRDAFPRVTSLTVYVRSPTTLQLLLLVPWPELRHVKLVRWHQRPASAPGSDFAVLLEKCKSLSSLDLSSFYHWPEDLPPVLLANPVTAASLKRLNLLTTSFTEGFRAHEIHSITAVCPNLEQFLVACTFDPRYHGYVGDEALLAIASNCPKLSLLHLADTSSLANRRGDPLDEGFTAEDARISRTTLVEFFSGLPLLEELVLDVCKNVRDSSFALEVLNSKCPKLKVLKLGQFHGICLAIGSQLDGIALCQGLQSLSIKNCADLTDMGLIEIARGCSRLVQFEVQGCKHITEKGLRTMTCLLRKTLIDVKISCCLNLDTAASLRALEPIRDRIERLHLDCVWNGLRETDNLGQTILDVDLNSLDEPRSSNLKTADFVDYFGSTEYEDTSRRKRQRYNYSSEADCSNGYWCNSWDRLRYLSLWIGVGELLTPLPMAGLEECPNLEEIRIKVEGDCRGRPKPSEREFGLSILTCYPQLTKMQLDCGETRGYALTAPSGKMDLSPWERFFLNGIGTLSLNELDYWPPQDEDVNQRSLSLPAAGLLQECDTLRKLFVHGTAYEHFMMFFLKIRNLRDVQLREDYYPAPGNDMSTEMRVGSCSRFEDALNRRQIYD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0890 711 PANTHER UNCHARACTERIZED 12 437 - -
Glsi04g0890 711 CDD F-box_AtTIR1-like 9 48 - -
Glsi04g0890 711 FunFam F-box/LRR-repeat protein 4 9 48 - -
Glsi04g0890 711 Pfam F-box 10 49 IPR041567 -
Glsi04g0890 711 SUPERFAMILY RNI-like 100 417 - -
Glsi04g0890 711 SMART LRR_CC_2 350 375 IPR006553 -
Glsi04g0890 711 SMART LRR_CC_2 376 401 IPR006553 -
Glsi04g0890 711 Gene3D Ribonuclease Inhibitor 11 468 IPR032675 -
Glsi04g0890 711 SUPERFAMILY F-box domain 6 45 IPR036047 GO:0005515
Glsi04g0890 711 ProSiteProfiles F-box domain profile. 6 53 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0890 Glsi-ChrGlsi04 6525260 6527395 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0890 04 6525260 6527395 Glsi04g0890 04 6525260 6527395 ECH