Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01240 ATGGGTGACGGAACAACTGTCAGCAACCTCCCGGAGGAGATCCTGTCGAACGTCTTCTCCGCCGTCTCCGACACGCGCACGCGAAACTCGTTGTCCCTGGTGTGTAGAAGCTTCTTCCGGTTGGAACGCAAGACGCGCATCTCGCTCACGCTGCGAGGGAACGCGCGTGACCTGCACCTCATCCCGACCTCCTTCACGCACGTCACACACCTCGACCTCTCCTTCCTTTCACCGTGGGGCCACGCGCTCTTCAGCTCCTCGGCCACCACCACCTTCGACCCGCGCCTCCTCGCGCTCCGCCTCCGCGACGCCTTCCCTCGCGTCACCTCGCTCGCCGTGTACGCGCGCGACCCCGCTACGCTCCAACTCCTCCTCCTCTCCCCCTGGCCGGAGCTCTCCAGCGTCAAGCTCGTGCGCTGGCACCAGCGCCCGCCGACATCGCCAGCGGGATCCGACTTCGCCGTGCTGTTCTCGCAGTGCCGATCGCTAGCCTCGTTCGACCTCTCCTCGTTTTACCACTGGCCGGAGGACCTCCCGCCCGTGCTGGCGGCCAACCCTGACACTGCAGCCTCGCTCCGCCGTCTAAATCTCTTGACAACCTCCTTCACGGAGGGTTTCAAGTCTCATGAAATCGAATCCATCACCGCATCGTGTCCTAATCTGGAACACTTTCTCGTGGCTTGCACCTTCGATCCGAGATATATAGGGTTCGTTGGAGACGACACGCTGGTTGCTATTCCGTCCAATTGCCCGAAGCTCAAGCTCCTTCACTTGGCCGATACGTCGTCGTTTTCTAATCGCAGAGAGGACGGGGGTTTCGGGGGAGAAGATGGTAGGGTTAGCCGTGCTACTCTAGTGACTTTGTTCTCCGGACTTCCTCTTTTGGAAGAGTTGGTGTTGGATGTTTGTAAAAATGTGAGGGATAGTAGTTTGGCGCTGGAAGTGTTGGGTTCTAAGTGCCCTAATTTGAGGGTTCTGAAATTAGGCCAGTTTCAAGGGATTTGCTTGGCCCTTGGATCTAAGCTTGACGGAGTTGCCCTCTGCCATGGGCTTCACTCTTTGTCTGTTGGTAACTGCGCGGACCTTGATGATATGGGGTTGATTGAAATTGGCAGAGGGTGTTCCAGGCTGGTTAGCTTCGAGCTTCAGGGTTGCAAGCTTGTGACTGAGCAGGGGCTCAGGACCATGGCTTGTTTGCTTCGCAGGACTATGATTGACGTGAAGGTTTCTGGCTGCGCCAACCTTGACACCGCCGCGACTCTCAGAGCTTTGGAGCCGATTCGGGACCGGATTGAGCGGCTACATGTGGATTGTGTGTGGAATGGGTTGAAGGAAAGTGATGGCCTGGGCCATGGGTTTCTTACTTTTGATCTGAATGGTTTGGATGAGCTGGATGATGGTGGTGAGTTAATGGATTACTTTGGGGATGGAGAATGTGAGAATACAAGCAAAAGGAAGAGGCAAAGATGCAAGTACGAAATGGGGGTTCATGATTCCTTTTTGGAAAGCAATGACAATGGTCTCTATGGCAAGTGCTGGGACAGGCTGCGGTATCTTTCTCTTTGGATAAAAGTTGGTGATCTGTTGACTCCATTGCCAGTGGCAGGGTTGGAGGATTGTCCTAATTTGGAAGAGATTCTTATAAAGGTTGAAGGAGATAGCAGGGGGCAACCGAAACCAGCAGAGCGGGAGTTTGGTCTGAGCATTCTGGCTTGTTATCCTCAGCTGTTGAAGATGCAGCTGGACTGTGGTGATACCAAAGGTTATGCCCTTACAGCACCATCAGGGCAAATGGATTTGAGCCTGTGGGAGAGGTTCTTTCTAAATGGCATTGGCAGTTTGAGTCTGAATGAGCTTCATTACTGGCCACCACAAGATGAGGATGTGAACCAGAGGAGTGTGTCACTTCCAGCTGCTGGTTTGCTACGGGAATGTTATACTTTGAGGAAGCTCTTCATTCACGGGACAGCTCATGAGCATTTCATGGATTTTTTCCTCAAGACACCAAACCTAAGGGATGTACAGCTGAGGGAGGATTATTACCCAGCCCCTGAGAATGACATGAGCACAGAAATGAGAGTGGCCTCCTGCAGCCGCTTTGAAGATGCACTGAATAGGCGTCGAATCTGTGATTGA 2136 0.5365 MGDGTTVSNLPEEILSNVFSAVSDTRTRNSLSLVCRSFFRLERKTRISLTLRGNARDLHLIPTSFTHVTHLDLSFLSPWGHALFSSSATTTFDPRLLALRLRDAFPRVTSLAVYARDPATLQLLLLSPWPELSSVKLVRWHQRPPTSPAGSDFAVLFSQCRSLASFDLSSFYHWPEDLPPVLAANPDTAASLRRLNLLTTSFTEGFKSHEIESITASCPNLEHFLVACTFDPRYIGFVGDDTLVAIPSNCPKLKLLHLADTSSFSNRREDGGFGGEDGRVSRATLVTLFSGLPLLEELVLDVCKNVRDSSLALEVLGSKCPNLRVLKLGQFQGICLALGSKLDGVALCHGLHSLSVGNCADLDDMGLIEIGRGCSRLVSFELQGCKLVTEQGLRTMACLLRRTMIDVKVSGCANLDTAATLRALEPIRDRIERLHVDCVWNGLKESDGLGHGFLTFDLNGLDELDDGGELMDYFGDGECENTSKRKRQRCKYEMGVHDSFLESNDNGLYGKCWDRLRYLSLWIKVGDLLTPLPVAGLEDCPNLEEILIKVEGDSRGQPKPAEREFGLSILACYPQLLKMQLDCGDTKGYALTAPSGQMDLSLWERFFLNGIGSLSLNELHYWPPQDEDVNQRSVSLPAAGLLRECYTLRKLFIHGTAHEHFMDFFLKTPNLRDVQLREDYYPAPENDMSTEMRVASCSRFEDALNRRRICD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01240 711 ProSiteProfiles F-box domain profile. 4 51 IPR001810 GO:0005515
Vimu5g01240 711 SUPERFAMILY F-box domain 3 42 IPR036047 GO:0005515
Vimu5g01240 711 CDD F-box_AtTIR1-like 8 46 - -
Vimu5g01240 711 FunFam F-box/LRR-repeat protein 4 7 46 - -
Vimu5g01240 711 PANTHER UNCHARACTERIZED 9 435 - -
Vimu5g01240 711 Pfam F-box 8 46 IPR041567 -
Vimu5g01240 711 SMART LRR_CC_2 250 291 IPR006553 -
Vimu5g01240 711 SMART LRR_CC_2 292 317 IPR006553 -
Vimu5g01240 711 SMART LRR_CC_2 348 373 IPR006553 -
Vimu5g01240 711 SMART LRR_CC_2 374 399 IPR006553 -
Vimu5g01240 711 Gene3D Ribonuclease Inhibitor 14 448 IPR032675 -
Vimu5g01240 711 SUPERFAMILY RNI-like 154 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01240 Vimu-Chr5 22008862 22010997 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01240 - - gmx:100807914 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01240 5 22008862 22010997 Vimu5g01240 5 22008862 22010997 ECH