Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01238 TTTCAATTTGATTTGAGTCTGGGTTTTGCAGAAACAAATCAGATGATTCTAAAGAATCTGATGGAAGAAAAGCAGTTAGATTTTGATCAGCCTCTTCTATCAGTGAGGAGAATCTCATCAACAGTGGTCTCTGAAAAGGAAAATAAAAGGAAACCTGATAAGGCAGTACCCAAAAGACCTCCTCTTCCGTTTTACAAATCAGATTTAAAATCAGGTCCAGTGAGCAACCCTGGAACTGTTCCTTTTGTGTGGGAGAAAACTCCCGGAAAGCCTAAGAATGAAAGCAGACTACAAACACAGGCTGTTGGACGAGCTTCTGTTGCTCCAAAGCTTCCACCTGGGAGGGTTTTGAAAGCTGATCAGCAAGATTCTGATAAAGTTCCTAAAGTTACATCAGTTACACAATCTAGCACAGAAAGCAGTGTTTCAGATCCCGAGCATGCTGCATCTTTGGATAATCAAGTGACAGAACATGAAAGCCCCAAAGAAGTAATTGAGAAGGCAAGTTCTGGCTCAGACAATGAGGATGAGACCTATCTAGATGCTCTTGATACACTTTCCAGAACTGAATCATTCTTCATGAGTTGTAGTGTGAGTGGTTTGAGTGAATGGGATGATCAGGAGGTCCAACCATCTGGAAGTTTTCCAACAGAGCAACAGGCGCGTGATTTCATTATTGATAGGTTCTTGCCTGCTGCAAAGGCAATGGCTTCTGAAACACCTTCACTTCAACACCACTCTAGGAAGCCACTTGTTACACTAGAACAACCAAAACTAATAAGAAAAGTAGTAACTGGAACAACTTCCCGCCCCCTAAATGAGAAATGGCAAAAGGTTTTGCCACATTATGTTCAAGATACTGGTAGGGAAGGAAGTGAAGATGAAAGTGATGATAATGATGGATATGAAAACTATGCACCCAAAGTTTGTGGACTATTTCCTCGGTTCTGCCTTTTGAATCCAGTTCCAGGATTAAGAGTGGAAGGTAGGATTCCAAGTTCTAGAGGACATGGAGTGCAGAATAAACCAATTGCATCTCACAGAAAAACTGCAAAAGAGCATGGTAGAACTGCTAATAATGTGAAAATGTCACTAAACTCTCAATCCGGCTTTACAAAAGAGAAGAAAGATTTCGGTACAGCAGAAAAATCTGAGCATTGTATTGATCCACCTCGCCGAGGTTGCAGCAAACCATTAACCTCTGAGAGCTCTCAATTTGAGTCAAGCAGTGAAAGCCCTGTTGTTGAGAAAACTCTATATGTAGATTCTGTACATGAGGTCAAATCTTCAAATCCATGTTCTTCGGCCACCAATCACAGAGGGGATGATTTTGATACTTCAAGGAAAGACACTGATCTTGATAAAAATCTTTGTATAGATTATTCAATTGAGGAAAGCAAACACTTGGGTATTGTGGATGAAAAGGCTGTCTTACAAGCTAAAAGTTCAGCTTCTCTTGATTCATCTCTCCTGGTTGATGCTGATAATTCAAATGATGATCTGCAAATGGAACTGAAAAATCATCCCAACAAAATATGCCCAGAAGAGCAAGAATTGACAAAGCCTAATTACCAAGGGAATAATTTAGATCATGCTTTGGTTGCATTTTCAAGTCCGGCCATGGTTGAATCCAGGAAAAGAGAGTCTGAAAGCAAAGATTTTAGCATTAAGGAAGGTTCTAATGCTCCTGTTTCATGGAGAAACAAGAAGTTTACTAGTGATTTGAAATTTGATTCAAAGGGCCTGTCAGCTACCAAAGTGTTTGATGAAGAATGCACTCTTAGATCTAGTGAGGATCCTAGTATTTTGACTTGCTCAAAGGTGGTAGGTGACACAAAATTGTATATAAAGTTGGGCCATGGAGAGACTTTAAATGCAAGCTCTACGAAGCATCCTCTTGCACTTCCTTCACCAAAAGCTCCTTCAGAGTCTTGGCTTAAGCGCACTTTGCCAACAGTTTCCTCTAAGAACATATTTTTACGGTCTAAACTTTCTACCCACTTGCCTGCACCAGCTCAAACTCCCAGCACAGCATTACCGGATCCTAAGTGGGAAAGAATTGTTAAATCTTCTAAAGCTAATCATGGGCATCTTCAGTTTGCTGAGGAACTACTTCCAACCATTCCTGAAGCATGA 2136 0.4054 FQFDLSLGFAETNQMILKNLMEEKQLDFDQPLLSVRRISSTVVSEKENKRKPDKAVPKRPPLPFYKSDLKSGPVSNPGTVPFVWEKTPGKPKNESRLQTQAVGRASVAPKLPPGRVLKADQQDSDKVPKVTSVTQSSTESSVSDPEHAASLDNQVTEHESPKEVIEKASSGSDNEDETYLDALDTLSRTESFFMSCSVSGLSEWDDQEVQPSGSFPTEQQARDFIIDRFLPAAKAMASETPSLQHHSRKPLVTLEQPKLIRKVVTGTTSRPLNEKWQKVLPHYVQDTGREGSEDESDDNDGYENYAPKVCGLFPRFCLLNPVPGLRVEGRIPSSRGHGVQNKPIASHRKTAKEHGRTANNVKMSLNSQSGFTKEKKDFGTAEKSEHCIDPPRRGCSKPLTSESSQFESSSESPVVEKTLYVDSVHEVKSSNPCSSATNHRGDDFDTSRKDTDLDKNLCIDYSIEESKHLGIVDEKAVLQAKSSASLDSSLLVDADNSNDDLQMELKNHPNKICPEEQELTKPNYQGNNLDHALVAFSSPAMVESRKRESESKDFSIKEGSNAPVSWRNKKFTSDLKFDSKGLSATKVFDEECTLRSSEDPSILTCSKVVGDTKLYIKLGHGETLNASSTKHPLALPSPKAPSESWLKRTLPTVSSKNIFLRSKLSTHLPAPAQTPSTALPDPKWERIVKSSKANHGHLQFAEELLPTIPEA 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01238 711 MobiDBLite consensus disorder prediction 427 448 - -
Vimu5g01238 711 MobiDBLite consensus disorder prediction 397 411 - -
Vimu5g01238 711 MobiDBLite consensus disorder prediction 151 174 - -
Vimu5g01238 711 MobiDBLite consensus disorder prediction 357 374 - -
Vimu5g01238 711 MobiDBLite consensus disorder prediction 42 57 - -
Vimu5g01238 711 Pfam Protein of unknown function (DUF688) 21 372 IPR007789 -
Vimu5g01238 711 MobiDBLite consensus disorder prediction 375 392 - -
Vimu5g01238 711 MobiDBLite consensus disorder prediction 329 411 - -
Vimu5g01238 711 PANTHER N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED 21 705 - -
Vimu5g01238 711 MobiDBLite consensus disorder prediction 40 177 - -
Vimu5g01238 711 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01238 Vimu-Chr5 21985744 21988060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01238 - - pvu:PHAVU_011G129400g 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01238 5 21985744 21988060 Vimu5g01238 5 21985744 21988060 ECH
Vimu2g00782 2 4789857 4792114 Vimu5g01238 5 21985744 21988060 ECH
Vimu4g01167 4 10416186 10417803 Vimu5g01238 5 21985744 21988060 PCT
Vimu5g01238 5 21985744 21988060 Vimu4g01149 4 10109859 10113127 PCT