Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03409 ATGGTTGGTAACAACGACGATACTACCCTCACTCAACTGCCGGAGGAGATCTTGTCGCAAGTGTTTGCTGGCATCACTGATACACGGACGAGAAACTCGCTTTCCCTTGTATGTCGGAGTTTCTTCCGGTTAGAGAGGAAGACGAGAGTGTCACTCACGCTCCGTGGGAACGCGCGTGACCTTTACAGGATTCCAATTTCCTTCGGCCGTGTTACCAATCTTGATGTCTCTCTTCTCTCGCCGTGGGGTCACGCGCTCTTCTGTTCACCCGTCACTGCTGATTCTCCGTTTTTAGCTCAGCGTCTCCGTAATGCTTTCCCGCGCGTGACTTCACTCACTGTCTACGTGCGTGACCCTCAAACGCTGCATCTGCTATTGTATAGCCACTGGCCGGAGCTCCGTGAGGTACGTCTTGTCAGATGGCACCAGCGTCCGCCGGGGTTGCAGGCAGGCTCTGACTTCGCCGCCTTATTCTCGCGGTGCCGATCGCTAACCTCGCTGGATTTATCTTCTTTCTACCACTGGCCGGAGGATCTCCCACCGGTTCTAGCAGCAAACGCTGCCACCGCCGTCTCTCTCCGCCGTTTGAATCTCCTGACGACGTCGTTCACGGAAGGTTTCAAGTCTAACCAAATCGAATCCATCACCTCATCGTGTCCTAACCTAGAGCACCTTCTCGTGGCTTGCACTTTTGATCCGAGATACATCGGATTTGTAGGTGACGAAACGTTGTTGGCCATCGCTTCCAATTGCCCCAAGCTCAAGCTTCTTCACATGGCTGATACCTCGTCGTTCTCAAATCGTAGAGAGGAAGAGGGTGGAGAGGATGCTAGTGTAAGCCGCGCCACGCTTCTATCGTTGTTTTCTAAGCTTCCCCTTTTGGAAGAACTGGTTCTAGATGTTTGTAAAAATGTAAGTGAGAGTAGTTTTGCTTTGGAGATGTTAAGTTCCAAGTGTCCAAATCTAAAGGTTGTGAAGTTGGGTCAGTTTCAAGGGATTTGTTTGGCAATTGGGTCACGCCTTGACGGAATTGCACTTTGCCACGGGCTTCAATCCTTGTCTGTTAGTTGCTGTGGTGACCTTGATGACATGGGGTTGATTGAGATTGGCAGAGGGTGTTCCCGGTTGGTAAGGTTTGAGATTCAGGGATGCAAGCTTGTTACGGAGAAAGGGTTGAAAACCATGACTTGCTTGCTTCGTAAGACATTGATTGATGTCAAGGTTGCTTCCTGTGTTAATCTTGATGCAGCCGCTACTCTCAGAGCTTTGGAGCCGATTCGGGACAGAATTGAGAGGCTTCACTTGGATTGTGTTTGGAAGGAAAATGACAACCTTGGACATAGTTTTTTCAACTTTGACTTGAATGCTTCAGCTGAACTGAATGATTCTGAATTAATGGAATGCTTTGGAGGTGAGGAATATGGAGAAGATACTAGCAAAAGGAAGAGGCAGAGATTTGAGTATGGATTCGAGGATGATGATTCATTTGTGCAAAGCAATGGTAACAGTAACGGCAATGACAATGGCTATTCTTGCAATAGTTGGGATAGTTTGCATTACCTTTCTCTTTGGATAAAGGTTGGTGATCTTCTGACTCAGTTGCCAGCGGCAGGGTTAGAGGATTGCCCCAATCTAGAAGAGATCCGCATAAAGATTGAAGGAGATTGCAGAGGGCAACCAAAACCAGCTGTGAGTGAATTTGGTCTGAGCATTCTGACTTGTTATCCTCAGTTGTCAAAGATGCAGCTGGATTGCGGTGATACAAAAGGTTATGTATACACCGCCCCTTCAGGACAGATGGATTTGAGCTTGTGGGAGAGATTCTTCCTTAATGGAATTGGCAGTTTGAGTCTAAATGAGCTTCATTACTGGCCACCACAAGATGAGGATGTGAATCAGAGGAGTCTGTCACTTCCTGCTGCTGGCTTGCTACAAGAATGTTATACTCTGAGGAAGCTTTTCATTCATGGGACAACTCATGAACACTTCATGAACTTTTTCCTCAAAATACCAAACCTAAGGGATGTTCAGCTGAGGGAGGATTACTATCCAGCCCCGGAGAATGATATGAGCACGGAAATGAGGGTGGGATCATGTAGCCGCTTTGAAGATGCGTTGAATAGGCGTATAATTTGTGACTGA 2142 0.4757 MVGNNDDTTLTQLPEEILSQVFAGITDTRTRNSLSLVCRSFFRLERKTRVSLTLRGNARDLYRIPISFGRVTNLDVSLLSPWGHALFCSPVTADSPFLAQRLRNAFPRVTSLTVYVRDPQTLHLLLYSHWPELREVRLVRWHQRPPGLQAGSDFAALFSRCRSLTSLDLSSFYHWPEDLPPVLAANAATAVSLRRLNLLTTSFTEGFKSNQIESITSSCPNLEHLLVACTFDPRYIGFVGDETLLAIASNCPKLKLLHMADTSSFSNRREEEGGEDASVSRATLLSLFSKLPLLEELVLDVCKNVSESSFALEMLSSKCPNLKVVKLGQFQGICLAIGSRLDGIALCHGLQSLSVSCCGDLDDMGLIEIGRGCSRLVRFEIQGCKLVTEKGLKTMTCLLRKTLIDVKVASCVNLDAAATLRALEPIRDRIERLHLDCVWKENDNLGHSFFNFDLNASAELNDSELMECFGGEEYGEDTSKRKRQRFEYGFEDDDSFVQSNGNSNGNDNGYSCNSWDSLHYLSLWIKVGDLLTQLPAAGLEDCPNLEEIRIKIEGDCRGQPKPAVSEFGLSILTCYPQLSKMQLDCGDTKGYVYTAPSGQMDLSLWERFFLNGIGSLSLNELHYWPPQDEDVNQRSLSLPAAGLLQECYTLRKLFIHGTTHEHFMNFFLKIPNLRDVQLREDYYPAPENDMSTEMRVGSCSRFEDALNRRIICD 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03409 713 SUPERFAMILY RNI-like 118 401 - -
Vivi5g03409 713 Gene3D - 9 49 - -
Vivi5g03409 713 FunFam F-box/LRR-repeat protein 4 10 49 - -
Vivi5g03409 713 ProSiteProfiles F-box domain profile. 7 54 IPR001810 GO:0005515
Vivi5g03409 713 NCBIfam bacterial surface protein 26-residue repeat 157 172 IPR011889 -
Vivi5g03409 713 Pfam F-box 11 49 IPR041567 -
Vivi5g03409 713 Gene3D Ribonuclease Inhibitor 51 458 IPR032675 -
Vivi5g03409 713 PANTHER UNCHARACTERIZED 12 434 - -
Vivi5g03409 713 CDD F-box_AtTIR1-like 13 49 - -
Vivi5g03409 713 SMART LRR_CC_2 373 398 IPR006553 -
Vivi5g03409 713 SMART LRR_CC_2 219 250 IPR006553 -
Vivi5g03409 713 SMART LRR_CC_2 347 372 IPR006553 -
Vivi5g03409 713 SMART LRR_CC_2 291 316 IPR006553 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03409 - - gmx:100807914 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03409 5 125776178 125778793 Vivi5g03409 5 125776178 125778793 ECH