Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01518 ATGGTTCTCTCCAAAACCGCCTCCGAATCCGACGTTTCTGTCCACTCTACCTTTGCTTCTCGTTATGTCAGAACTTCACTTCCCAGGTTCAGGATGCCGGAAGAGTCGATTCCAAAGGACGCAGCGTATCAGATTATCAACGATGAATTGATGTTGGATGGGAACCCAAGGTTGAACTTGGCTTCATTTGTGACGACATGGATGGAACCTGAGTGTGATAAACTCATCATGGCTTCCATTAACAAGAACTATGTGGACATGGATGAGTACCCTGTCACCACTGAGCTTCAGAATCGATGTGTGAACATGATAGCCCATCTTTTTAATGCACCACTACAAGAATCTGAAGCTGCTGTTGGTGTTGGCACGGTCGGTTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAAGTGGCAAAACAGAAGGAAAGAAGAGGGAAAACCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAGGAAGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGACCAAGCTGTGGAATTGGTGGATGAGAACACTATTTGTGTAGCAGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAGGATGTCAAACGCCTCAATGATCTTCTCATTGAAAAGAATAAGCAAACTGGGTGGGACACTCCTATTCATGTTGATGCAGCCAGTGGTGGCTTCATTGCCCCATTTATTTACCCAGAGCTTGAGTGGGACTTCCGATTACCACTAGTGAAGAGCATCAATGTTAGTGGGCACAAGTATGGTTTGGTGTATGCTGGAATCGGTTGGATTATCTGGAGAAGCAAGGAGGACTTGCCTGAGGAACTCATTTTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACACTTAACTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAATACTACCAACTAATCCGCCTTGGTTATGAGGGCTACAGAAACGTGATGGAAAATTGCAGAGATAACATGTTGGTGCTGAAAGAGGGACTCGAGAAGACAGGGCGGTTTACCATTGTGTCCAAAGACAATGGCGTGCCTTTGGTGGCTTTCACCCTGAAAGACCACACCCACTTTGACGAATTCCAAATCTCTGACTTGCTGAGGCGATTTGGATGGATTGTGCCAGCGTACACCATGCCCCCAGATGCTCAACATGTTACAGTGCTTCGTGTTGTCATCAGGGAGGACTTCTCAAGAACCCTTGCAGAGCGTCTCGTGGCAGATGTGGAAAAGGTGGTTCATGAGCTTGATGCCCTTCCAGCAAGGGTGATAAGTAGCACCAGTGTGACAGTCAACACAGAAGAAAATGGCAAAGTGGTTAAGAAGAGTGCTCTGGAGACACAGAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTCAATGACAAGATGAGTGGTGTTTGCTAG 1506 0.4648 MVLSKTASESDVSVHSTFASRYVRTSLPRFRMPEESIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQESEAAVGVGTVGSSEAIMLAGLAFKRKWQNRRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPDQAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWIIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMLVLKEGLEKTGRFTIVSKDNGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVVHELDALPARVISSTSVTVNTEENGKVVKKSALETQREITAVWKKFVLERKKLNDKMSGVC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01518 501 FunFam Glutamate decarboxylase 361 448 - -
Phco11g01518 501 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Phco11g01518 501 PANTHER GLUTAMATE DECARBOXYLASE 1 491 IPR010107 GO:0004351|GO:0006536|GO:0030170
Phco11g01518 501 FunFam Glutamate decarboxylase 1 65 - -
Phco11g01518 501 Gene3D - 1 65 - -
Phco11g01518 501 CDD DOPA_deC_like 59 439 - -
Phco11g01518 501 Gene3D - 361 448 - -
Phco11g01518 501 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Phco11g01518 501 Gene3D - 66 360 IPR015421 GO:0003824
Phco11g01518 501 FunFam Glutamate decarboxylase 66 360 - -
Phco11g01518 501 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01518 Phco-Chr11 11542725 11549231 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01518 11 11542725 11549231 Phco11g01518 11 11542725 11549231 ECH
Phco11g01518 11 11542725 11549231 Phco3g00540 3 4206923 4212873 PCT