Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0853 ATGATCGATGTGGTGAAGTTTGTGCAGAGAACAATGCTGATGACACCTGAGAGACGAAGAGCTATCTGGGCAATATATGTGTGGTGTCGGAGAACAGATGAGCTTGTTGATGGGCCTAATGCATCACACATAACCCCAACAGCCTTGGATAGGTGGGAGTCAAGGTTGGAAGATCTTTTTCAGGGCCGCCCTTTTGATATGCTTGATGCTGCTTTATCAGATACAGTTGCCAAGTTTCCTGTTGACATTCAGCCATTCAAAGATATGATTGAAGGTATGAGGATGGACCTTAGAAAGTCAAGATACAGAAATTTCGATGAACTATATCTGTACTGTTACTATGTGGCGGGAACTGTTGGGTTAATGAGCGTTCCAGTTATGGGCATTGCACCTGAATCACAGGCAACCACGGAGAGTGTCTATAAGGCAGCCTTGGCATTAGGGATCGCAAATCAGCTGACTAACATACTCAGGGATGTTGGAGAAGATGCAAGGAGAGGAAGGATTTATTTACCACAGGATGAGCTGGCACAAGCAGGGCTCTCAGATGAGGACATTTTTATGGGAAGGGTAACAGATAAATGGAGAAGCTTCATGAAAGATCAAATTAAGAGAGCAAGGATGTTCTTCGATGAGGCGGAAAAAGGAATTACGGAGCTCAGCTCAGCTAGTAGATGGCCGGTATGGGCATCTTTTCTGTTGTATCGGCAAATACTGGATGAGATTGAAGCTAACGATTACAACAACTTCACTAGGAGAGCTTATGTGAGCAAAGCTAAGAAGATAGTTGCTTTGCCACTAGCCTATGCAAGGTCCCTTGTGAGGCCATCAAGAACAACATCTTTAGTCAAGGCATGA 858 0.4441 MIDVVKFVQRTMLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFQGRPFDMLDAALSDTVAKFPVDIQPFKDMIEGMRMDLRKSRYRNFDELYLYCYYVAGTVGLMSVPVMGIAPESQATTESVYKAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAGLSDEDIFMGRVTDKWRSFMKDQIKRARMFFDEAEKGITELSSASRWPVWASFLLYRQILDEIEANDYNNFTRRAYVSKAKKIVALPLAYARSLVRPSRTTSLVKA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0853 285 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 7 275 - -
Vvi4g0853 285 SFLD Isoprenoid Synthase Type I 10 272 - -
Vvi4g0853 285 SUPERFAMILY Terpenoid synthases 11 274 IPR008949 -
Vvi4g0853 285 Gene3D Farnesyl Diphosphate Synthase 6 266 IPR008949 -
Vvi4g0853 285 SFLD Phytoene synthase like 10 272 IPR044843 GO:0004311
Vvi4g0853 285 FunFam Phytoene synthase chloroplastic 4 267 - -
Vvi4g0853 285 ProSitePatterns Squalene and phytoene synthases signature 1. 111 126 IPR019845 GO:0016765
Vvi4g0853 285 ProSitePatterns Squalene and phytoene synthases signature 2. 147 172 IPR019845 GO:0016765
Vvi4g0853 285 CDD Trans_IPPS_HH 11 261 IPR033904 GO:0004311
Vvi4g0853 285 Pfam Squalene/phytoene synthase 11 258 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0853 Vvi-Chr4 11495723 11499126 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0853 K02291 - vvi:100246195 551.592