Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0513 . . . . . . . . . Aev05g0618 Ahy20g1668 . Aip10g01940 Aip05g00685 . . . . Apr3g1680 . . . . . . . Bva13g00277 Bva14g00351 Car06g01702 Car08g00515 . . . . . Dod02g0677 . . . . . . Gma11g01146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g3393 . . . . . . . Mtr4g2827 . . . . . . . Psa7g2803 Psa2g3754 . . . . . . . . . . . . . . . . . . Sto2g0627 Sto10g0207 Tpr4g1853 . . . Tsu02g03403 . . . . . . . . . . . . .
Vvi3g0514 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0515 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g00276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto2g0628 . . . . . . . . . . . . . . . . . . .
Vvi3g0516 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr4g2828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0517 . . . . . . . . . . . . . . . . . . Apr3g1681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g3394 . . . . . . . Mtr4g2829 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto2g0629 . . . . . . . . . . . . . . . . . . .
Vvi3g0518 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g00275 Bva14g00350 Car06g01701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu2g01748 . . . . . . . . . . . . . . . . . . . . Mtr4g2830 . . . . Phco8g03290 . . Psa7g2802 . . Pste1g03626 . . . . . Pumo8g00209 . Pvu3g0129 . Rops1g00226 . Seca10g05331 . Spst2g02131 . . . . . . . . Tsu02g03407 . . Vian10g01803 . . . Vimu7g00347 . Viun2g00253 . . . .
Vvi3g0519 . . . . . . . . . . Ahy20g1660 . Aip10g01927 . . . . . Apr3g1682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g3372 Mal7g3398 . . . . . . . Mtr4g2831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu02g03409 . . . . . . . . . . . . .
Vvi3g0520 . . . . . Adu10g03046 . . . . . . . . . . . . . . . . . . . . Bva13g00274 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu2g01750 . . . . . . . . . . . Lja2g3373 . . . Mepo4g01245 . Mesa1g01370 . . . . . . . . . . . . . Pste1g03628 . . . . . Pumo8g00206 . Pvu3g0128 . Rops1g00227 . Seca10g05330 . Spst2g02132 . . Sto2g0630 . . . . Trre1g01319 . . . Vian10g01804 . . . Vimu7g00348 . Viun2g00251 . Vivi4g03848 . .
Vvi3g0521 . . . . . . . . . . Ahy20g1654 . Aip10g01924 . . . . . Apr3g1683 . . . . . . . Bva13g00273 Bva14g00349 Car06g01700 . . . . . . . . . . . . . . . . . . . . Lal2g0183 . . . . . . . . . . . . . . . . . . . . . . . . Mal7g3399 . . . . . . . Mtr4g2832 . . . . Phco8g00046 . . Psa7g2801 . . . . . Pte3g01839 . . . . Pvu3g3027 . . . . . . . . Sto2g0631 Sto10g0208 . . . . Tsu02g03410 . . . . . . Vimu11g01172 . . . . . .
Vvi3g0522 . . . . . . . . . Aev05g0617 . Ahy15g0672 . Aip05g00686 . . . . Apr3g1684 . . . . . . . Bva13g00271 Bva14g00347 . Car08g00516 . . . . . Dod02g0676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g0361 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0513 Chr3 4368852 4388209 -
Aev Aev05g0618 Chr05 4262214 4266650 +
Ahy Ahy20g1668 Chr20 72503415 72508667 +
Aip Aip10g01940 Chr10 68499206 68504638 +
Aip Aip05g00685 Chr05 8603027 8607720 -
Apr Apr3g1680 Chr3 32378100 32383720 -
Bva Bva13g00277 Chr13 1309220 1314765 +
Bva Bva14g00351 Chr14 1739622 1745597 +
Car Car06g01702 Chr06 16792043 16796735 +
Car Car08g00515 Chr08 4363258 4367152 -
Dod Dod02g0677 Chr02 8827676 8832997 +
Gma Gma11g01146 Chr11 9645461 9646403 +
Mal Mal7g3393 Chr7 98767243 98771631 -
Mtr Mtr4g2827 Chr4 41926336 41932068 -
Psa Psa7g2803 Chr7 201169534 201174393 +
Psa Psa2g3754 Chr2 399291011 399295390 +
Sto Sto2g0627 Chr2 5310355 5315624 -
Sto Sto10g0207 Chr10 1727207 1731896 -
Tpr Tpr4g1853 Chr4 19429485 19434826 +
Tsu Tsu02g03403 Chr02 38067865 38069820 -
Vvi Vvi3g0514 Chr3 4405632 4406382 +
Vvi Vvi3g0515 Chr3 4415428 4416019 -
Bva Bva13g00276 Chr13 1303375 1305700 +
Sto Sto2g0628 Chr2 5332248 5334895 -
Vvi Vvi3g0516 Chr3 4422527 4423196 -
Mtr Mtr4g2828 Chr4 41954352 41955404 -
Vvi Vvi3g0517 Chr3 4427053 4427709 -
Apr Apr3g1681 Chr3 32395029 32395902 -
Mal Mal7g3394 Chr7 98792894 98793603 -
Mtr Mtr4g2829 Chr4 41959171 41960131 -
Sto Sto2g0629 Chr2 5336934 5338086 -
Vvi Vvi3g0518 Chr3 4430290 4430939 -
Bva Bva13g00275 Chr13 1302081 1302551 +
Bva Bva14g00350 Chr14 1734413 1735417 +
Car Car06g01701 Chr06 16775945 16777181 +
Lapu Lapu2g01748 Chr2 31177036 31177695 -
Mtr Mtr4g2830 Chr4 41962539 41963532 -
Phco Phco8g03290 Chr8 47538259 47545001 -
Psa Psa7g2802 Chr7 201107886 201108998 +
Pste Pste1g03626 Chr1 17258365 17259216 -
Pumo Pumo8g00209 Chr8 6405318 6424415 +
Pvu Pvu3g0129 Chr3 1175568 1176271 +
Rops Rops1g00226 Chr1 6600713 6601986 -
Seca Seca10g05331 Chr10 121557414 121558761 +
Spst Spst2g02131 Chr2 20282411 20283034 +
Tsu Tsu02g03407 Chr02 38106400 38107336 -
Vian Vian10g01803 Chr10 29855325 29855996 +
Vimu Vimu7g00347 Chr7 4013380 4014007 +
Viun Viun2g00253 Chr2 4971298 4972200 +
Vvi Vvi3g0519 Chr3 4445631 4446279 -
Ahy Ahy20g1660 Chr20 71049540 71051075 +
Aip Aip10g01927 Chr10 67188248 67190634 +
Apr Apr3g1682 Chr3 32401073 32401808 -
Lja Lja2g3372 Chr2 77019058 77019735 -
Mal Mal7g3398 Chr7 98825599 98826468 -
Mtr Mtr4g2831 Chr4 41967000 41968000 -
Tsu Tsu02g03409 Chr02 38126014 38126880 -
Vvi Vvi3g0520 Chr3 4450893 4454544 +
Adu Adu10g03046 Chr10 106451543 106455559 -
Bva Bva13g00274 Chr13 1297183 1301459 -
Lapu Lapu2g01750 Chr2 31186108 31192365 +
Lja Lja2g3373 Chr2 77057199 77070349 +
Mepo Mepo4g01245 Chr4 16014990 16025917 +
Mesa Mesa1g01370 Chr1 18860397 18875953 +
Pste Pste1g03628 Chr1 17279298 17282171 +
Pumo Pumo8g00206 Chr8 6369085 6369856 -
Pvu Pvu3g0128 Chr3 1160081 1167002 -
Rops Rops1g00227 Chr1 6611547 6616606 +
Seca Seca10g05330 Chr10 121518424 121529158 -
Spst Spst2g02132 Chr2 20283838 20293305 +
Sto Sto2g0630 Chr2 5341108 5344684 +
Trre Trre1g01319 Chr1 9890852 9895538 +
Vian Vian10g01804 Chr10 29860240 29865778 +
Vimu Vimu7g00348 Chr7 4016351 4021577 +
Viun Viun2g00251 Chr2 4939843 4946830 -
Vivi Vivi4g03848 Chr4 157831250 157836411 +
Vvi Vvi3g0521 Chr3 4455953 4465426 -
Ahy Ahy20g1654 Chr20 70076671 70080334 +
Aip Aip10g01924 Chr10 66240032 66243952 +
Apr Apr3g1683 Chr3 32406323 32410818 -
Bva Bva13g00273 Chr13 1292793 1295795 +
Bva Bva14g00349 Chr14 1729721 1733591 +
Car Car06g01700 Chr06 16768766 16773135 +
Lal Lal2g0183 Chr2 1076480 1082755 -
Mal Mal7g3399 Chr7 98830738 98834150 -
Mtr Mtr4g2832 Chr4 41969617 41973283 -
Phco Phco8g00046 Chr8 412808 415747 -
Psa Psa7g2801 Chr7 201095240 201098204 +
Pte Pte3g01839 Chr3 29247176 29251748 -
Pvu Pvu3g3027 Chr3 51961197 51965267 +
Sto Sto2g0631 Chr2 5346052 5349474 -
Sto Sto10g0208 Chr10 1741947 1745197 -
Tsu Tsu02g03410 Chr02 38132406 38135981 -
Vimu Vimu11g01172 Chr11 12698776 12703172 +
Vvi Vvi3g0522 Chr3 4477616 4479745 -
Aev Aev05g0617 Chr05 4249499 4254520 +
Ahy Ahy15g0672 Chr15 8955754 8957641 -
Aip Aip05g00686 Chr05 8624118 8625749 -
Apr Apr3g1684 Chr3 32435442 32438999 -
Bva Bva13g00271 Chr13 1285052 1287168 +
Bva Bva14g00347 Chr14 1722067 1723346 +
Car Car08g00516 Chr08 4371999 4374630 -
Dod Dod02g0676 Chr02 8812441 8815294 +
Lja Lja2g0361 Chr2 3333828 3336119 -