Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco8g03290 | ATGGATCTGAAGTTTACAAATGGAGTGATGATAATAGTTATTATGAGCGCTTCAATGTTTTCAGTGAGCATGGGCAACAAAGATTGGTCCTTTGGTTTCAACTACACTGATTGGTGGTCCAGGTTTGGGAATCATCCTCAAAACAAAACACAGCAACAACCCAGACAGATTCTTGTGGGTGGTTCTCAGCATTGGCACTTTGGCTACAACTACACCGATTGGGCCATCAAGAATGCCCCATTTTACCTCAATGATACTCTTGTTTTCAAATATGATGCTCCAAATGCCACCACTTTCCCACACAGTGTGTACATGTTCAAGAGTTATGGGAGCTTCTTGAAGTGTGACATAAAAAAGGCTAAGATGTTGGCAAGTCCCATGCAAGGTGGAGGAGAGGGGTTCAAGTTTGTGTTGAAGAGGTGGCAGCCACATTTCTTTGCCTGTGGTGAGAGAAATGGCTTCCATTGCATCAACGGCACCATGAACTTTGCTGTCATGCCAATTGAGAAGATCAACTGCAATAAGGGGATTGTTTTCCACCAAAAAGAGAATAAAAGATCAAGACCTGACTTGGTCATGGATTCACCAAAAAGATTACAAAAACAGTCGACGGTGCTCTTGATGTTGGTGGTAGTGTCACTGTTCTTGCTCCTTGCTCCAGTGATTATCGTTCCCTCTGTTCCCCATTGTAGCTTCCCCTTCAGTGTCATCCTGTTTGGTTATTGGAAGGCATTGTTTGATTTTGAAAACACCAACCAGAGGCTTAGAAGTGATGTGTATCACAGCAGTGGCAAAAGCACAATGGTTTTACCCAAAACTCAATATCAGCGTCGTTGCTTTTCGTCAAGCAGAAGCAGAAGCAGAAGCAGTGCGTGTTCATCTTCTTCCAATGACGCTATCGTTGGGGAGAGAGCAATCGCGTACCTTAAGCGCCACCCTCAAATGCTCGCATCGCTTTCTCCTCACTTCACACCCCAAGCGGCTTCCTACGTTTTACTCCACTCCCAATCCAACCAACGCATTCTCCTCAAATTCCTCTCATGGGCCCAAGCCCAGGCCCATGCCCACACTTTCTTCACCCCGCACTGCAAGTCTCTCGCCATCCACATCCTCACCCGCTTCAAGCTCTACAACACTGCCCACTCCCTCGCCGCCACCCTCCTCCACCACACCGCTGCCGACCTCTTCCGCCACCTTCATGACACTCACAACCTCTGCAACTCCTCCTCCGCCGCCGCGGCCGGTGCGTTCGACCTCGTCGTCAAATCCCTCTCCCGCCTCGACTTCCCCGACAAAGCCCTCACCGTCCTCCACCTCGCCACCCGCCACGGCTTCGCGCTCGCTGTCCTCTCCCATAACGCCATCCTCCACGCGCTGCTCCGCCGCGTGCACCATAAAAGCTCCCTCCGCCAAGCCGAGCAAATGTTCCGCGAGATGATCCGCTGCGGCGTGTCGCCGAACGTGTACACGTACAACATCATGATTCGCGGTGTGGTTGACCGGGGAGACTTGGAGAAGGGGTTCGGGTTCATGCGCGAGATGGAGAGGGAAGGGGTTTCACCGACTGTGGTTACTTACAACACGCTGATCGACGCGTGTTGCAAGAGGAGGAAGGTGAAGGAGGCGATGGGGCTGCTGAGAATGATGGCGGCGAGGGGCGTGGTTGCGAATTTGATTTCGTACAATTCGGTGATTAATGGATTGTTTGGAGAAGGGAGGATGAGTGAGGTTGGGGAGTTGGTTGAGGAGATGAGTGAGAGAGGGTTTGTTCCTGATGAGGTCACTTATAATACTCTTGTTAATGGGTTTTGCAAGGAGGGGAATTTCCACCAGGGCTTTGTGCTGCTTGCTGAGATGGTTGGGAAGGGGTTGTCACCAAATGTTGTTACTTACACTACTTTGATCAACTGTATGTGCAAGGCTGGGAATTTGAGTCGAGCTATGGAGATTTTCGATCAGATGCGTGTTAGGGGGCTGAGGCCAAATGAGAGGACTTACACCACCATGATTGATGGGTTCTGCCGGAAAGGGTTGCTGAATGATGCTTATAGGGTCTTGAGTGAGATGATTGTTAGTGGATTTTCGCCGTCGGTTGTGACTTACAACGCCCTTGTCCATGGATATTGCTTTCTGGGGAGGGTGGAGGAGGCTGTGGGGATTTTGAGGGGGATGACTGAGAGGGGGTTGTCTCCTGATGTTGTGAGTTATAGCACCGTTATAGCTGGGTTTTGCCGAGAGCGAGAGCTGGGGAAAGCGTTTCGAATGAAGGAGGAGATGGTCGAGAAGGGTGTTTTGCCTGATGGGATTACATATTCATCGCTCATACAGGGTCTTTGTCTGCAAAAGAAACTGGTGGAGGCTTTTGATTTGTTCCGAGAGATGCTGCAAATGGGTCTCCTGCCTGATGAGGTCACGTATACTAGTTTGATTAATGCTCATTGTGTTCAGGGTGAGTTGAGCAAGGCTCTTCGTTTGCACGATGAAATGATCCAGAGGGGCTTTTTGCCTGATGATGTTACCTACAGTGTACTTATTAATGGACTTGATAAGAAGGCTAGGACGAAGGAAGCAAAGAGGCTTCTTCTGAAGTTGTTTTATGAGGAGCGTGTACCAAATCAGGTAACGTACAATACATTGATCGAAAACTGCAGTAATAATGAATTTAAGAGTGTGGTAGGTCTTGTGAAAGGATTCTGTGTGAAGGGTTTGATGAATGAAGCGGATCAAGTTTTTAAGACAATGCTTCGGAGGAATCATAAGCCTAATGCAGCAATTCATAATTTAATAATACACGGACATTGTAGAAGTGGAAATGTTCACAAGGCGTATAAGATGTATGCGGAGTTGGAACATTGTGGTTTTGTTTCTCATACGGTGACTGTAATTGCTCTTGTCAAGGCACTATCTAGGGAAGGGATGAATGATGAGCTTAGTCAAGTATTGCAAAATGTGTTGAGGAGTTGTAAGCTCAATGATGCTGAGGTAGCTAAAGTACTTGTTGAGGTTAACTTTAAAGAAGGTAACATGGACGCTGTTTTGAATGTGCTAACTGGAATGGCCAAGGATGGCCTGCTACCTGATGGTGGGATGCATTCATTTGCTCCGGGAAGTACCTAA | 3117 | 0.4812 | MDLKFTNGVMIIVIMSASMFSVSMGNKDWSFGFNYTDWWSRFGNHPQNKTQQQPRQILVGGSQHWHFGYNYTDWAIKNAPFYLNDTLVFKYDAPNATTFPHSVYMFKSYGSFLKCDIKKAKMLASPMQGGGEGFKFVLKRWQPHFFACGERNGFHCINGTMNFAVMPIEKINCNKGIVFHQKENKRSRPDLVMDSPKRLQKQSTVLLMLVVVSLFLLLAPVIIVPSVPHCSFPFSVILFGYWKALFDFENTNQRLRSDVYHSSGKSTMVLPKTQYQRRCFSSSRSRSRSSACSSSSNDAIVGERAIAYLKRHPQMLASLSPHFTPQAASYVLLHSQSNQRILLKFLSWAQAQAHAHTFFTPHCKSLAIHILTRFKLYNTAHSLAATLLHHTAADLFRHLHDTHNLCNSSSAAAAGAFDLVVKSLSRLDFPDKALTVLHLATRHGFALAVLSHNAILHALLRRVHHKSSLRQAEQMFREMIRCGVSPNVYTYNIMIRGVVDRGDLEKGFGFMREMEREGVSPTVVTYNTLIDACCKRRKVKEAMGLLRMMAARGVVANLISYNSVINGLFGEGRMSEVGELVEEMSERGFVPDEVTYNTLVNGFCKEGNFHQGFVLLAEMVGKGLSPNVVTYTTLINCMCKAGNLSRAMEIFDQMRVRGLRPNERTYTTMIDGFCRKGLLNDAYRVLSEMIVSGFSPSVVTYNALVHGYCFLGRVEEAVGILRGMTERGLSPDVVSYSTVIAGFCRERELGKAFRMKEEMVEKGVLPDGITYSSLIQGLCLQKKLVEAFDLFREMLQMGLLPDEVTYTSLINAHCVQGELSKALRLHDEMIQRGFLPDDVTYSVLINGLDKKARTKEAKRLLLKLFYEERVPNQVTYNTLIENCSNNEFKSVVGLVKGFCVKGLMNEADQVFKTMLRRNHKPNAAIHNLIIHGHCRSGNVHKAYKMYAELEHCGFVSHTVTVIALVKALSREGMNDELSQVLQNVLRSCKLNDAEVAKVLVEVNFKEGNMDAVLNVLTGMAKDGLLPDGGMHSFAPGST | 1038 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 767 | 801 | IPR002885 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Phytocyanin domain profile. | 55 | 169 | IPR003245 | GO:0009055 | |
| Phco8g03290 | 1038 | Gene3D | Tetratricopeptide repeat domain | 892 | 1016 | IPR011990 | GO:0005515 | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 487 | 521 | IPR002885 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 887 | 921 | IPR002885 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 592 | 626 | IPR002885 | - | |
| Phco8g03290 | 1038 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 328 | 779 | - | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 627 | 661 | IPR002885 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 697 | 731 | IPR002885 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 802 | 836 | IPR002885 | - | |
| Phco8g03290 | 1038 | Gene3D | - | 53 | 168 | IPR008972 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 522 | 556 | IPR002885 | - | |
| Phco8g03290 | 1038 | SUPERFAMILY | Cupredoxins | 55 | 167 | IPR008972 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 732 | 766 | IPR002885 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 557 | 591 | IPR002885 | - | |
| Phco8g03290 | 1038 | Gene3D | Tetratricopeptide repeat domain | 783 | 891 | IPR011990 | GO:0005515 | |
| Phco8g03290 | 1038 | Gene3D | Tetratricopeptide repeat domain | 405 | 543 | IPR011990 | GO:0005515 | |
| Phco8g03290 | 1038 | Gene3D | Tetratricopeptide repeat domain | 692 | 782 | IPR011990 | GO:0005515 | |
| Phco8g03290 | 1038 | Pfam | PPR repeat family | 626 | 675 | IPR002885 | - | |
| Phco8g03290 | 1038 | Pfam | PPR repeat family | 801 | 848 | IPR002885 | - | |
| Phco8g03290 | 1038 | Pfam | PPR repeat family | 557 | 605 | IPR002885 | - | |
| Phco8g03290 | 1038 | Pfam | PPR repeat family | 731 | 779 | IPR002885 | - | |
| Phco8g03290 | 1038 | Pfam | PPR repeat | 693 | 724 | IPR002885 | - | |
| Phco8g03290 | 1038 | Pfam | PPR repeat | 918 | 947 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 665 | 698 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 804 | 837 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 769 | 803 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 925 | 955 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 699 | 733 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 524 | 557 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 894 | 923 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 559 | 593 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 734 | 767 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 489 | 523 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 629 | 663 | IPR002885 | - | |
| Phco8g03290 | 1038 | NCBIfam | pentatricopeptide repeat | 594 | 628 | IPR002885 | - | |
| Phco8g03290 | 1038 | Gene3D | Tetratricopeptide repeat domain | 547 | 618 | IPR011990 | GO:0005515 | |
| Phco8g03290 | 1038 | Gene3D | Tetratricopeptide repeat domain | 619 | 691 | IPR011990 | GO:0005515 | |
| Phco8g03290 | 1038 | Pfam | Pentatricopeptide repeat domain | 475 | 536 | IPR002885 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 662 | 696 | IPR002885 | - | |
| Phco8g03290 | 1038 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 922 | 956 | IPR002885 | - |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco8g03290 | 8 | 47538259 | 47545001 | Phco8g03290 | 8 | 47538259 | 47545001 | ECH |