Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0516 ATGGGTTTCACTTCTGCACGAGGGGTACTCACCTTACTGGTATTGACTGCTTCCATGTTAGCAGTTGGTTTGGCAAGCAGATCCATTGCAGGCAGGCCTGCAAACTATTGGAATTTCGGCTTCAACCACAGCTTTTGGGGTCCCAGAAATGGTCATCCATTCCACCCCAATAATAATAATACTACTCGACCTCCCAAGAAGTTCATCGTCGGTGGATCGGAGCACTGGCGCTATGGCTTTAACTACACTGACTGGGCTCTCAATAACGGTCCCTTCTACGTTAATGATACTTTAGTGTTCAAGTATGATCCTCCAAGCAAGACAACATTTCCTCACAGTGTGTACTTGCTGCCAAACCCTTGGAGCTTCTTGACATGCGACCTCAGCAAGGCGGAGCAGGTGGCTACGGTGGCTCAAGGAGGCGGTGAGGGTTTCGAGTTTGTGCTGAAGAACTGGTGGCCTCACTACTTTGCCTGCGGAGAACACGATGGGTTGCACTGCAAAGAGGGGATGATGAAGTTCTTTGTGATGCCGCTGCTTGGTCCTTACCATGGCTGA 558 0.5 MGFTSARGVLTLLVLTASMLAVGLASRSIAGRPANYWNFGFNHSFWGPRNGHPFHPNNNNTTRPPKKFIVGGSEHWRYGFNYTDWALNNGPFYVNDTLVFKYDPPSKTTFPHSVYLLPNPWSFLTCDLSKAEQVATVAQGGGEGFEFVLKNWWPHYFACGEHDGLHCKEGMMKFFVMPLLGPYHG* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0516 185 SUPERFAMILY Cupredoxins 66 177 IPR008972 -
Vvi3g0516 185 Gene3D - 65 178 IPR008972 -
Vvi3g0516 185 Pfam Plastocyanin-like domain 79 171 IPR003245 GO:0009055
Vvi3g0516 185 ProSiteProfiles Phytocyanin domain profile. 66 180 IPR003245 GO:0009055
Vvi3g0516 185 PANTHER GLYCINE-RICH PROTEIN-LIKE 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0516 Vvi-Chr3 4422527 4423196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0516 62 171 Miscellaneous Gene Families AT3G27200 29.730 1.91e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0516 - - vvi:100245201 378.637