LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g1656	ATGTCTTCCTTCTCTGTTCGCTTTCTAACCCCTCCATGCTGCCCCAACTCTCGCCCCAAGACATGTCTCTCTGCCACACCAACAGTGGCTCCCATTTCCTCAGAGGTAGAGGCATCAAGGTTGGATCCTAGAGTGGAGCAAAGAGATGGGTACTGGGTTTTGAAGGAAGATTATAGGGGTGGCATCAACCCTCAAGAAAAAGTGAAGCTTGAGAAAGACCCCATGAAGCTTTTTATGGAAGGTGGCATTGATGAATTGGCAAAGATGTCTCTTGAGGAAATTGAGAGCTCTAAGCTCACTAAGGATGATATTGATGTCAGGCTCAAGTGGCTTGGCCTTTTTCATAGGAGAAAGCATCACTATGGTAGATTTATGATGAGGCTGAAACTTCCAAATGGGGTGACAACAAGTGCCCAAACACGATACTTGGCGAGTGTGATTAGAAAGTATGGGAAAGATGGGTGTGCTGATGTGACAACGAGGCAGAATTGGCAAATTCGAGGTGTGGTGTTATCTGATGTCCCAGAAATTCTTAAGGGCCTCGCAGAGGTTGGATTGACGAGTCTACAGAGTGGCATGGACAATGTGAGAAACCCTGTGGGTAACCCTCTTGCTGGTATTGACCCATATGAGATTGTTGATACCCGATCTTATAACAACTTGTTATCTCAATTCATCACTGCCAATTCACTTGGCAACCCTACCATATCAAACTTACCAAGGAAGTGGAATGTGTGCGTGGTGGGATCCCATGATCTCTATGAGCATCCTCACATAAATGACCTGGCTTACATGCCTGCTAATAAGGATGGTCGTTTTGGATTTAACTTACTGGTTGGTGGTTTCTTTAGTGCCAAGCGATGTGCAGAAGCAATTCCACTTGATGCATGGGTCTCTGCAGATGATGTAATCCCAGTGTGTAAAGCTGTCCTTGAGACCTATAGGGACCTTGGCACCAGAGGGAACAGACAGAAAACAAGAATGATGTGGTTGATTGATGAACTGGGGATGGAAGTATTCAGGTCAGAAGTGGAAAAAAGAATGGCAGGGAAGCAGCTAGAGAGAGCATCTGAGGAAGATCTGGTTCAGAAACAATGGGAAAGAAGAGACTACTTAGGTGTTCATCCACAGAAACAAGAGGGCTTAAGCTATGTTGGGATTCACATTCCAGTTGGTAGAGTGCAAGCAGATGAGATGGATGAACTAGCCCGTTTGGCAGATAAATATGGCACTGGTGAACTACGGCTCACAGTGGAGCAAAACATAATAATTCCTAATGTGGACAACTCAAAAGTTGAGGCCTTACTCAAAGAACCTCTCTTGAAAGAGAGGTTATCACCTGAACCTTCCCTCCTCATGAAAACACTTGTGGCATGCACTGGTAACCAATTTTGTGGGCAAGCCATAATTGAGACAAAGGCAAGGGCCTTGAAAGTGACTGAAGAAGTGGAGAGGCAAGTGGCAGTGACTAGGCCTGTGAGAATGCATTGGACTGGCTGTCCTAACACTTGTGGCCAAGTGCAGGTTGCTGATATTGGTTTCATGGGGTGCATGACTAGGGATGAGAATGGTAAGGCCACTGAAGGTGTTGATATTTTCTTAGGAGGGAGAATTGGAAGTGATTCACATTTAGGAGAGGTTTATAAGAAGGGTGTCCCTTGCAAAAACTTGGTGCCCATTGTAGTAGACATACTAGTAAAAAAATTTGGTGCTGTCCAAAGGAATAGAGAAGAAGGGGAAGATTAA	1746	0.4502	MSSFSVRFLTPPCCPNSRPKTCLSATPTVAPISSEVEASRLDPRVEQRDGYWVLKEDYRGGINPQEKVKLEKDPMKLFMEGGIDELAKMSLEEIESSKLTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLSDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPYEIVDTRSYNNLLSQFITANSLGNPTISNLPRKWNVCVVGSHDLYEHPHINDLAYMPANKDGRFGFNLLVGGFFSAKRCAEAIPLDAWVSADDVIPVCKAVLETYRDLGTRGNRQKTRMMWLIDELGMEVFRSEVEKRMAGKQLERASEEDLVQKQWERRDYLGVHPQKQEGLSYVGIHIPVGRVQADEMDELARLADKYGTGELRLTVEQNIIIPNVDNSKVEALLKEPLLKERLSPEPSLLMKTLVACTGNQFCGQAIIETKARALKVTEEVERQVAVTRPVRMHWTGCPNTCGQVQVADIGFMGCMTRDENGKATEGVDIFLGGRIGSDSHLGEVYKKGVPCKNLVPIVVDILVKKFGAVQRNREEGED*	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g1656	581	SUPERFAMILY	Nitrite/Sulfite reductase N-terminal domain-like	41	192	IPR036136	GO:0016491
	Apr3g1656	581	Gene3D	Sulfite Reductase Hemoprotein, domain 1	185	370	IPR045854	-
	Apr3g1656	581	Gene3D	-	61	442	-	-
	Apr3g1656	581	PANTHER	FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC	1	581	-	-
	Apr3g1656	581	SUPERFAMILY	Nitrite and sulphite reductase 4Fe-4S domain-like	193	350	IPR045854	-
	Apr3g1656	581	Gene3D	Sulfite Reductase Hemoprotein, domain 1	450	580	IPR045854	-
	Apr3g1656	581	ProSitePatterns	Nitrite and sulfite reductases iron-sulfur/siroheme-binding site.	498	514	IPR006066	GO:0016491\|GO:0020037\|GO:0051536
	Apr3g1656	581	SUPERFAMILY	Nitrite/Sulfite reductase N-terminal domain-like	329	465	IPR036136	GO:0016491
	Apr3g1656	581	PRINTS	Sirohaem Fe-binding site signature	454	472	IPR006066	GO:0016491\|GO:0020037\|GO:0051536
	Apr3g1656	581	PRINTS	Sirohaem Fe-binding site signature	498	516	IPR006066	GO:0016491\|GO:0020037\|GO:0051536
	Apr3g1656	581	SUPERFAMILY	Nitrite and sulphite reductase 4Fe-4S domain-like	453	565	IPR045854	-
	Apr3g1656	581	Pfam	Nitrite/Sulfite reductase ferredoxin-like half domain	375	438	IPR005117	GO:0016491
	Apr3g1656	581	Pfam	Nitrite/Sulfite reductase ferredoxin-like half domain	117	184	IPR005117	GO:0016491
	Apr3g1656	581	Pfam	Nitrite and sulphite reductase 4Fe-4S domain	455	565	IPR006067	GO:0016491\|GO:0020037\|GO:0051536
	Apr3g1656	581	Pfam	Nitrite and sulphite reductase 4Fe-4S domain	193	349	IPR006067	GO:0016491\|GO:0020037\|GO:0051536
	Apr3g1656	581	PANTHER	FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC	1	581	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g1656	K00366		-	gmx:100775519	1079.32

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr3g1656	3	32072039	32075441	Apr3g1656	3	32072039	32075441	ECH