Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0460 ATGGAGCGGGTGGCCCACCTTAAAACGTCTTTATCATTTGCCACGTGGCTTGTAAGGGGACGCGGGTCCCAGCGCTACGCCGTTATCGATACTGTGATACTATGGACTCGATTTGGAGTCGTAGTGCCCTGTCCACAGCTTCGGACTTCCTCACTGCAATCTACTTCGCCTTCATCTTCATCGTCGCCAGGTTTTTCTTGGACAGATTCATCTATCGAGGGAGAGAAAGGTTTAATCTGTAAGTTGGACATTGAGAAGGCGTTTGATAGTATCAATTGGCAGTTTTTATTAAAGGTTATGCATAAGATGGGCTTCGGATCAAAATGGATAGGATGGATGTGGAGCTGTATTTCTACTATCAAATACTCAATGCTGGTGAATGGGGTTCCAAGGTTGGCCATCTGGTTATTGAGCAAGGGAGCTGTTCCATTGAAGAAAAATGATGCTACACTGGGAAAAATTGTAAAATGTTCGGAGTCTTTGTGGAAACTAACATACTATGCAACTGTTGAAGCATTCATTCTTGCTATTTCCTACCAAGAGCCATGGTTTAGAGATTCAAAGCAGTACTTTAGAGGGTGGCCAAATCAAGAGTTGACGCTTCCCCTCAAGCTTTTCTACATGTGCCAATGTGGGTTCTACATCTACAGCATTGCTGCCCTTCTTACATGGGAAACTCGCAGGAGGGATTTCTCTGTGATGATGTCTCATCATGTAGTCACTGTTATCCTAATTGGGTACTCATACATATCAAGTTTTGTCCGGATCGGCTCAGTTGTCCTTGCCCTGCACGATGCAAGTGATGTCTTCATGGAAGCTGCAAAAGTTTTTAAATATTCTGAGAAGGAGCTTGCAGCAAGTGTGTGCTTTGGATTTTTTGCCATCTCATGGCTTGTCCTACGGTTAATATTCTTTCCCTTTTGGGTTATCAGTGCATCAAGCTATGATATGCAAAATTGCATGAATCTATCGGAGGCCTATCCCATGTTGCTATACTATGTTTTCAATACAATGCTCTTGACACTACTTGTGTTCCATATATACTGGTGGATTCTTATATGCTCAATGATTATGAGACAGCTGAAAAATAGAGGACAAGTTGGAGAAGATATAAGATCTGATTCAGAGGACGATGAATAG 1140 0.4254 MERVAHLKTSLSFATWLVRGRGSQRYAVIDTVILWTRFGVVVPCPQLRTSSLQSTSPSSSSSPGFSWTDSSIEGEKGLICKLDIEKAFDSINWQFLLKVMHKMGFGSKWIGWMWSCISTIKYSMLVNGVPRLAIWLLSKGAVPLKKNDATLGKIVKCSESLWKLTYYATVEAFILAISYQEPWFRDSKQYFRGWPNQELTLPLKLFYMCQCGFYIYSIAALLTWETRRRDFSVMMSHHVVTVILIGYSYISSFVRIGSVVLALHDASDVFMEAAKVFKYSEKELAASVCFGFFAISWLVLRLIFFPFWVISASSYDMQNCMNLSEAYPMLLYYVFNTMLLTLLVFHIYWWILICSMIMRQLKNRGQVGEDIRSDSEDDE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0460 379 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 62 128 IPR000477 -
Vvi3g0460 379 SMART lag1_27 155 362 IPR006634 GO:0016020
Vvi3g0460 379 Pfam TLC domain 156 354 IPR006634 GO:0016020
Vvi3g0460 379 PANTHER LONGEVITY ASSURANCE FACTOR 1 LAG1 147 378 IPR016439 GO:0046513|GO:0050291
Vvi3g0460 379 MobiDBLite consensus disorder prediction 49 69 - -
Vvi3g0460 379 ProSiteProfiles TLC domain profile. 155 362 IPR006634 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0460 Vvi-Chr3 3955099 3979284 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0460 - - vvi:104878786 510.375