LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g01726	ATGTCTTCTTTCTCTGTTCGTTTCCTCACACCTCCATCTATCTCTCGTCCCAAAACATGGATATTATCAGCTGCAACTCCATCATTTGCTCCATCAGTTTCTTCACAAGTTGATGCAACAAGGTTGGAGCCTAGGGTTGAGGAAAAAGATGGTTACTGGGTTTTGAAGGAAGAGTACAGGGGAGGTATTAATCCTCAGGAAAAAGTTAAACTTCAGAAAGAACCCATGAAGCTTTTCATGGAAGGTGGGATTCATGATTTGGCTAATATGTCTCTTGAGGAAATTGAAAGCTCTAAGCTTACAAAAGATGATATTGATGTTAGACTCAAATGGCTTGGTCTTTTTCACAGGAGAAAACATCACTATGGTAGATTTATGATGAGACTGAAACTTCCAAATGGGGTATCAACAAGTGAACAAACACGATACTTGGCGAGTGTCATAAGAAAGTATGGAAAAGATGGGTGTGCTGATGTTACAACAAGACAGAATTGGCAAATTAGAGGTGTAGTGTTACCTGATGTACCAGAAATTCTTAAGGGTCTTGCAGAGGTTGGGTTGACAAGTCTTCAGAGTGGCATGGACAATGTGAGAAACCCTGTTGGTAACCCTCTTGCTGGGTTTGATCCTGATGAGATTGTTGATACAAGACCTTACACCAACTTGTTGTCTCAATTCATCACTGCTAATTCACTTGGAAACCCAACCATTACAAACTTGCCAAGGAAGTGGAATGTATGTGTGGTGGGTTCTCATGATCTTTTTGAGCATCCACATATTAATGATCTTGCTTACATGCCTGCTAACAAGGAAGGTAGATTTGGATTCAACTTATTGGTGGGCGGTTTCTTTAGTCCCAAGAGATGTGCAGAAGCAGTTCCACTTGATGCATGGGTCTCTGCAGATGACGTTATCCCACTTTGTAAAGCTGTTCTTGAGACATATAGAGACCTTGGCACCAGAGGCAATAGACAGAAAACCAGAATGATGTGGTTGATTGATGAACTGGGAATAGAAGTATTCAGATCAGAGGTGGAAAAAAGAATGCCAGAGAAGAAGCTTTCAAGAGCATCCCAAGAAGATCTTATTCAAAAAAAATGGGAAAGAAGAGACTACTTAGGTGTTCATCCACAAAAACAAGAGGGTTTAAGCTATGTTGGTATTCACATTCCAGTTGGTAGAATCCAAGCAGATGAGATGGACGAGCTAGCTCGTTTGGCCGACGAATATGGCACAGGGGAACTCCGGCTAACCGTGGAACAAAACATAATAATCACAAATGTAGAAAACTCAAAACTTAATGCATTGCTTCAAGAGCCTCTCTTGAAAGACAAATTCTCACCTTCACCTTCCATACTAATGAAAACCCTTGTGGCATGCACTGGTAACCAATTTTGTGGACAAGCTATAATTGAGACAAAAGCAAGGGCTTTGAAAGTGACTGAAGAAGTTGAGAGACAAGTGGCAGTGTTTAAACCAGTTAGAATGCACTGGACTGGTTGTCCTAACACTTGTGGACAAGTGCAAGTTGCTGATATTGGTTTTATGGGCTGCATGACTAGGGATGAAAATGGTAAGATTACTGAAGGGGTAGATATTTTCCTTGGTGGAAGAATTGGAAGTGATTCTCATCTAGCTGAGGTTTATAAGAAGGGTGTTCCTTGTAAGGACTTGGTGCCAATTGTGGCAGATATATTGGTAAAATATTTTGGTGCTGTCCAAAGGAATAGAGAAGAAGGGGATGATTAA	1749	0.4082	MSSFSVRFLTPPSISRPKTWILSAATPSFAPSVSSQVDATRLEPRVEEKDGYWVLKEEYRGGINPQEKVKLQKEPMKLFMEGGIHDLANMSLEEIESSKLTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVSTSEQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGFDPDEIVDTRPYTNLLSQFITANSLGNPTITNLPRKWNVCVVGSHDLFEHPHINDLAYMPANKEGRFGFNLLVGGFFSPKRCAEAVPLDAWVSADDVIPLCKAVLETYRDLGTRGNRQKTRMMWLIDELGIEVFRSEVEKRMPEKKLSRASQEDLIQKKWERRDYLGVHPQKQEGLSYVGIHIPVGRIQADEMDELARLADEYGTGELRLTVEQNIIITNVENSKLNALLQEPLLKDKFSPSPSILMKTLVACTGNQFCGQAIIETKARALKVTEEVERQVAVFKPVRMHWTGCPNTCGQVQVADIGFMGCMTRDENGKITEGVDIFLGGRIGSDSHLAEVYKKGVPCKDLVPIVADILVKYFGAVQRNREEGDD	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g01726	582	ProSitePatterns	Nitrite and sulfite reductases iron-sulfur/siroheme-binding site.	499	515	IPR006066	GO:0016491\|GO:0020037\|GO:0051536
	Car06g01726	582	PANTHER	FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC	1	582	-	-
	Car06g01726	582	PRINTS	Sirohaem Fe-binding site signature	455	473	IPR006066	GO:0016491\|GO:0020037\|GO:0051536
	Car06g01726	582	PRINTS	Sirohaem Fe-binding site signature	499	517	IPR006066	GO:0016491\|GO:0020037\|GO:0051536
	Car06g01726	582	SUPERFAMILY	Nitrite and sulphite reductase 4Fe-4S domain-like	454	569	IPR045854	-
	Car06g01726	582	SUPERFAMILY	Nitrite/Sulfite reductase N-terminal domain-like	330	466	IPR036136	GO:0016491
	Car06g01726	582	Gene3D	Sulfite Reductase Hemoprotein, domain 1	451	581	IPR045854	-
	Car06g01726	582	Pfam	Nitrite and sulphite reductase 4Fe-4S domain	456	569	IPR006067	GO:0016491\|GO:0020037\|GO:0051536
	Car06g01726	582	Pfam	Nitrite and sulphite reductase 4Fe-4S domain	194	352	IPR006067	GO:0016491\|GO:0020037\|GO:0051536
	Car06g01726	582	SUPERFAMILY	Nitrite and sulphite reductase 4Fe-4S domain-like	194	354	IPR045854	-
	Car06g01726	582	PANTHER	FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC	1	582	-	-
	Car06g01726	582	Pfam	Nitrite/Sulfite reductase ferredoxin-like half domain	118	185	IPR005117	GO:0016491
	Car06g01726	582	Pfam	Nitrite/Sulfite reductase ferredoxin-like half domain	376	439	IPR005117	GO:0016491
	Car06g01726	582	Gene3D	-	62	443	-	-
	Car06g01726	582	Gene3D	Sulfite Reductase Hemoprotein, domain 1	186	371	IPR045854	-
	Car06g01726	582	SUPERFAMILY	Nitrite/Sulfite reductase N-terminal domain-like	42	193	IPR036136	GO:0016491

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g01726	K00366		-	gmx:100775519	1053.89

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car06g01726	06	17080046	17083247	Car06g01726	06	17080046	17083247	ECH