Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0461 ATGGGTATTACTACTTCCCTCTCATATCTTTTATTCTTCAACATCATCCTCCCAACCTTAACGGCTTCTCCAATACTGTTTCAGGGGTTCAATTGGGAATCATCCAAAAAGCAAGGAGGGTGGTACAACTTCCTCATCAACTCCATTCCTGAACTATCTGCCTCTGGAATCACTCATGTTTGGCTTCCTCCACCCTCTCAGTCTGCTGCATCTGAAGGGTACCTGCCAGGAAGGCTTTATGATCTCAATGCATCCCACTATGGTACCCAATATGAACTAAAAGCATTGATAAAGGCATTTCGCAGCAATGGGATCCAGTGCATAGCAGACATAGTTATAAACCACAGGACTGCTGAGAAGAAAGATTCAAGAGGAATATGGGCCATCTTTGAAGGAGGAACCCCAGATGATCGCCTTGACTGGGGTCCATCTTTTATCTGCAGTGATGACACTCTTTTTTCTGATGGCACAGGAAATCCTGATACTGGAGCAGGCTTCGATCCTGCTCCAGACATTGATCATGTAAACCCCCGGGTCCAGCGAGAGCTATCAGATTGGATGAATTGGTTAAAGATTGAAATAGGCTTTGCTGGATGGCGATTCGATTTTGCTAGAGGATACTCCCCAGATTTTACCAAGTTGTATATGGAAAACACTTCGCCAAACTTTGCAGTAGGGGAAATATGGAATTCTCTTTCTTATGGAAATGACAGTAAGCCAAACTACAACCAAGATGCTCATCGGCGTGAGCTTGTGGACTGGGTGAAAGCTGCTGGAGGAGCAGTGACTGCATTTGATTTTACAACCAAAGGGATACTCCAAGCTGCAGTGGAAGGGGAATTGTGGAGGCTGAAGGACTCAAATGGAGGGCCTCCAGGAATGATTGGCTTAATGCCTGAAAATGCTGTGACTTTCATAGATAATCATGACACAGGTTCTACACAAAAAATTTGGCCATTCCCATCAGACAAAGTCATGCAGGGATATGTTTATATCCTCACTCATCCTGGGATTCCATCCATATTCTATGACCACTTCTTTGACTGGGGTCTGAAGGAGGAGATTTCTAAGCTGATCAGTATCAGGACCAGGAACGGGATCAAACCCAACAGTGTGGTGCGTATTCTGGCATCTGACCCAGATCTTTATGTAGCTGCCATAGATGAGAAAATCATTGCTAAGATTGGACCAAGGTATGATGTTGGGAACCTTGTACCTTCAACCTTCAAACTTGCCACCTCTGGCAACAATTATGCTGTGTGGGAGAAACAGTAA 1275 0.4463 MGITTSLSYLLFFNIILPTLTASPILFQGFNWESSKKQGGWYNFLINSIPELSASGITHVWLPPPSQSAASEGYLPGRLYDLNASHYGTQYELKALIKAFRSNGIQCIADIVINHRTAEKKDSRGIWAIFEGGTPDDRLDWGPSFICSDDTLFSDGTGNPDTGAGFDPAPDIDHVNPRVQRELSDWMNWLKIEIGFAGWRFDFARGYSPDFTKLYMENTSPNFAVGEIWNSLSYGNDSKPNYNQDAHRRELVDWVKAAGGAVTAFDFTTKGILQAAVEGELWRLKDSNGGPPGMIGLMPENAVTFIDNHDTGSTQKIWPFPSDKVMQGYVYILTHPGIPSIFYDHFFDWGLKEEISKLISIRTRNGIKPNSVVRILASDPDLYVAAIDEKIIAKIGPRYDVGNLVPSTFKLATSGNNYAVWEKQ* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0461 424 Pfam Alpha-amylase C-terminal beta-sheet domain 364 422 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi3g0461 424 Gene3D - 367 424 IPR013780 -
Vvi3g0461 424 CDD AmyAc_arch_bac_plant_AmyA 25 373 - -
Vvi3g0461 424 SMART aamy 24 362 IPR006047 GO:0005975
Vvi3g0461 424 SUPERFAMILY (Trans)glycosidases 25 365 IPR017853 -
Vvi3g0461 424 Gene3D Glycosidases 24 366 - -
Vvi3g0461 424 PIRSF Alpha-amylase_plant 1 424 IPR013775 GO:0004556|GO:0005509|GO:0005975
Vvi3g0461 424 SUPERFAMILY Glycosyl hydrolase domain 367 423 - -
Vvi3g0461 424 PRINTS Alpha-amylase signature 196 207 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi3g0461 424 PRINTS Alpha-amylase signature 104 115 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi3g0461 424 PRINTS Alpha-amylase signature 300 312 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi3g0461 424 SMART alpha-amyl_c2 363 423 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi3g0461 424 PANTHER ALPHA-AMYLASE 26 422 - -
Vvi3g0461 424 Pfam Alpha amylase, catalytic domain 52 343 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0461 Vvi-Chr3 3981065 3983504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0461 5 424 Glycoside Hydrolase AT4G25000 65.258 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0461 K01176 - vvi:100245165 886.715