Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02476 ATGTCTTCTTTTTCTGTTCGTTTTCCGGCTCTTCCATGCTGCCCCAACTCTCGCTCCAAGACATGGCTTTGTGCCACGCCGACGGTGGCTCCGGCTGCCTCAGAGGCGGTGGAGTCGTCGAGGTTGGAGCCTAGAGTGGAGGAGAGAGATGGGTTCTGGGTTTTGAAGGAAGAGTACAGGGGAGGCATCAGCCCTCAAGAAAAGGTGAAGCTTGAGAAAGACCCTATGAAGCTTTTTATGGAAGGTGGAATTGAGGATTTGGCTAACATGTCCCTTGAGGAAATTGAGAGCTCCAAGCATACAAAGGATGATATTGATGTTAGACTCAAGTGGCTTGGCCTTTTTCATAGGAGAAAGCATCACTATGGTAGATTTATGATGAGGCTGAAGCTTCCAAATGGGGTGACAACTAGTGCTCAGACTAGATATTTAGCGAGTGTGATCAGGAAGTACGGAAAAGATGGGTGTGCTGATGTAACAACGAGGCAGAATTGGCAAATTAGAGGTGTGGTGCTACCTGATGTGCCAGAAATTCTTAAGGGACTAGCAGAGGTTGGTTTGACGAGTCTGCAGAGTGGCATGGACAATGTGAGAAACCCTGTGGGTAACCCTATTGCAGGCATTGACCCTGATGAGATTGTTGATACTAGACCTTACAACAACTTGTTATCTCAATTCATCACTGCCAATTCACGTGGCAACCCAGCCATGTCAAACTTGCCTAGGAAGTGGAATGTGTGTGTGGTGGGATCCCACGATCTGTTTGAGCATCCTCACATCAATGATCTGGCTTACATGCCTGCTAATAATAAGGATGGTCGTTTTGGATTCAACTTACTGGTTGGTGGTTTCTTTAGTGCCAAGAGATGTGCTGAAGCAATTCCACTTGATGCGTGGGTCTCTGCTGATGATGTAATCCCAGTTTGTAAAGCTGTCCTTGAGGCATATAGGGACCTTGGCTTCAGAGGGAACAGGCAGAAAACTAGAATGATGTGGTTGATTGACGAACTCGGGATAGAAGTATTCAGGTCAGAGGTGGAGAAAAGAATGCCAGGGAAACAGCTGGAGAGAGCTCAGGAAGATCTGGTCAAGAAACAATGGGAAAGAAGAGACTACTTGGGTGTTCATCCACAGAAACAAGAGGGTCTAAGCTATGTTGGTATTCACATTCCAGTTGGTAGAATCCAAGCAGATGAGATGGATGAGTTGGCCCGTTTGGCAGATGAATATGGCACTGGTGAGCTCAGGCTCACAGTGGAGCAAAACATAATAATCCCTAATGTGGAGAACTCAAAAATTGATGACTTGCTCGAAGAGCCTCTCTTGAAAGACAAGTTTTCACCTGAGCCTTCTCTCCTAATGAAAACACTGGTGGCATGCACTGGTAACCAGTTTTGTGGGCAAGCCATAATTGAGACAAAGGCCAGGGCATTGAAAGTTACTGAGGAAGTGGAGAGGCAAGTGGCTGTGACTAGGCCTGTGAGAATGCATTGGACTGGCTGCCCTAACACCTGTGGGCAGGTGCAAGTTGCAGATATTGGTTTCATGGGGTGCATGGCTAGGGATGAGAATGGTAAAGCCACTGAAGGTGTGGATATTTTCCTGGGAGGGAGAATTGGAAGTGATTCACATTTAGCTGAGTTGTATAAGAAGGGTGTGCCTTGCAAGAATTTGGTGCCTATTGTTGTAGACATACTAGTAAAACACTTCGGAGCTGTCCAAAGGAATAGAGAGGAAGGGGAAGATTAA 1749 0.4654 MSSFSVRFPALPCCPNSRSKTWLCATPTVAPAASEAVESSRLEPRVEERDGFWVLKEEYRGGISPQEKVKLEKDPMKLFMEGGIEDLANMSLEEIESSKHTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPIAGIDPDEIVDTRPYNNLLSQFITANSRGNPAMSNLPRKWNVCVVGSHDLFEHPHINDLAYMPANNKDGRFGFNLLVGGFFSAKRCAEAIPLDAWVSADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEVFRSEVEKRMPGKQLERAQEDLVKKQWERRDYLGVHPQKQEGLSYVGIHIPVGRIQADEMDELARLADEYGTGELRLTVEQNIIIPNVENSKIDDLLEEPLLKDKFSPEPSLLMKTLVACTGNQFCGQAIIETKARALKVTEEVERQVAVTRPVRMHWTGCPNTCGQVQVADIGFMGCMARDENGKATEGVDIFLGGRIGSDSHLAELYKKGVPCKNLVPIVVDILVKHFGAVQRNREEGED* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02476 582 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 42 193 IPR036136 GO:0016491
Lapu3g02476 582 Gene3D - 63 443 - -
Lapu3g02476 582 Pfam Nitrite and sulphite reductase 4Fe-4S domain 194 351 IPR006067 GO:0016491|GO:0020037|GO:0051536
Lapu3g02476 582 Gene3D Sulfite Reductase Hemoprotein, domain 1 186 371 IPR045854 -
Lapu3g02476 582 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 118 185 IPR005117 GO:0016491
Lapu3g02476 582 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 376 439 IPR005117 GO:0016491
Lapu3g02476 582 Gene3D Sulfite Reductase Hemoprotein, domain 1 451 581 IPR045854 -
Lapu3g02476 582 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 331 466 IPR036136 GO:0016491
Lapu3g02476 582 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 17 582 - -
Lapu3g02476 582 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 499 515 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lapu3g02476 582 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 194 353 IPR045854 -
Lapu3g02476 582 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 454 566 IPR045854 -
Lapu3g02476 582 PRINTS Sirohaem Fe-binding site signature 499 517 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lapu3g02476 582 PRINTS Sirohaem Fe-binding site signature 455 473 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lapu3g02476 582 Pfam Nitrite and sulphite reductase 4Fe-4S domain 456 566 IPR006067 GO:0016491|GO:0020037|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02476 K00366 - gmx:100775519 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02476 3 46729765 46733875 Lapu3g02476 3 46729765 46733875 ECH