Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1885 ATGTCTTCTTCATTCTCTATTCGTTTTCTCACCCCTCCATCAATCTCTCACCACAACAAAACATGGCTATTATCTGCTGCAACTCCATCAATTGCTCCTGTTTCAACACAAGTTGATGCATCAAGGTTGGAGCCTAGAGTTGAAGAAAAAGATGGTTATTGGATTTTGAAGGAAGAACATAGAGGAGGTATTAATCCTCAAGAAAAAGTTAAGATTCAGAAAGAACCCATGAAGCTTTTCATGGAAGGTGGGATTCATGATTTGGCTAATATGTCTCTTGAAGAAATTGAAAGCTCTAAACTTACTAAAGATGATATTGATGTTAGACTTAAATGGCTTGGTCTTTTTCATAGGAGAAAGCATCAATATGGAAGATTTATGATGAGACTGAAACTTCCAAACGGGGTAACAACAAGTGCACAAACACGTTACTTGGCGAGCGTGATCAGAAAGTACGGCAAAGATGGATGCGCTGATGTGACAACGAGGCAGAATTGGCAAATTCGAGGTGTAACGTTACCTGATGTTCCAGAAATTCTTAAGGGACTTGCAGAGGTTGGGTTAACAAGCCTGCAGAGTGGAATGGACAATGTGAGAAACCCTGTTGGTAACCCTCTTGCTGGTATTGACCCTGATGAGATTGTTGATACAAGACCTTACACCAATTTGTTATCTCAATTCATCACTGCTAATTCACTTGGTAACCCAACAATTACAAACTTGCCAAGGAAGTGGAATGTGTGTGTGATAGGTTCCCATGATCTTTTCGAGCATCCTCATATTAACGATCTTGCTTACATGCCTGCAAAAAATAAGGAAGGTCGATTTGGATTCAACTTATTGGTGGGTGGTTTCTTTAGTCCCAAGCGATGTGCAGAAGCAGTTCCACTTGATGCATGGGTTTCTGCAGATGATGTTATCCCACTTTGTAAAGCTGTTCTTGAAACCTATAGAGACCTCGGCACCAGAGGGAATAGACAGAAAACCAGAATGATGTGGTTGATTGATGAATTAGGCATAGAAGTATTCAGGTCAGAGGTGGAAAAAAGAATGCCAACAAAGAAGCTAGAGAGAGCATCAAAAGAAGAACTTGTTCAAAAGCAATGGGAAAGAAGAGATATCTTAGGTGTTCATCCACAAAAACAAGAAGGTTTATGCTATGTAGGAATCCACATTCCAGTCGGTCGAATCCAAGCAGACGAAATGGACGAGCTAGCTCGTTTGGCAGACGAATATGGCACCGGCGAACTAAGGCTAACCGTAGAACAAAACATAATAATTCCAAATGTCGAAAACTCAAAACTTGATGCATTACTTAATGAACCTCTCTTGAAACAAAAATTCTTACCTGAACCATCAATCCTAATGAAAACACTTGTAGCATGCACTGGTAACCAATTTTGTGGACAAGCAATAATTGAGACAAAAGCAAGGGCTTTGAAAGTAACCGAAGAAGTCGACAGATACGTGGCGGTTACTAAACCGGTTAGAATGCATTGGACTGGTTGTCCTAACACATGTGGTCAGGTTCAGGTTGCTGATATTGGTTTTATGGGTTGCATGGCTAGGGATGAAAATGGTAAACCTACTGAAGGTGTTGATATTTTTCTTGGCGGAAGAATTGGAAGTGATTCTCATTTAGCTGAAGTGTATAAGAAAAGTGTCCCTTGTAAGGATTTGGTGCCTATTGTAGCTGATATATTGGTTAAATATTTTGGGGGTGTCCCAAGGAATAGAGAAGAAGGGGATGATTAA 1755 0.4023 MSSSFSIRFLTPPSISHHNKTWLLSAATPSIAPVSTQVDASRLEPRVEEKDGYWILKEEHRGGINPQEKVKIQKEPMKLFMEGGIHDLANMSLEEIESSKLTKDDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKDGCADVTTRQNWQIRGVTLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRPYTNLLSQFITANSLGNPTITNLPRKWNVCVIGSHDLFEHPHINDLAYMPAKNKEGRFGFNLLVGGFFSPKRCAEAVPLDAWVSADDVIPLCKAVLETYRDLGTRGNRQKTRMMWLIDELGIEVFRSEVEKRMPTKKLERASKEELVQKQWERRDILGVHPQKQEGLCYVGIHIPVGRIQADEMDELARLADEYGTGELRLTVEQNIIIPNVENSKLDALLNEPLLKQKFLPEPSILMKTLVACTGNQFCGQAIIETKARALKVTEEVDRYVAVTKPVRMHWTGCPNTCGQVQVADIGFMGCMARDENGKPTEGVDIFLGGRIGSDSHLAEVYKKSVPCKDLVPIVADILVKYFGGVPRNREEGDD* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1885 584 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 3 584 - -
Tpr4g1885 584 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 195 357 IPR045854 -
Tpr4g1885 584 Gene3D Sulfite Reductase Hemoprotein, domain 1 187 373 IPR045854 -
Tpr4g1885 584 Gene3D - 63 445 - -
Tpr4g1885 584 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 332 468 IPR036136 GO:0016491
Tpr4g1885 584 Gene3D Sulfite Reductase Hemoprotein, domain 1 453 583 IPR045854 -
Tpr4g1885 584 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 3 584 - -
Tpr4g1885 584 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 43 194 IPR036136 GO:0016491
Tpr4g1885 584 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 456 571 IPR045854 -
Tpr4g1885 584 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 501 517 IPR006066 GO:0016491|GO:0020037|GO:0051536
Tpr4g1885 584 Pfam Nitrite and sulphite reductase 4Fe-4S domain 458 571 IPR006067 GO:0016491|GO:0020037|GO:0051536
Tpr4g1885 584 Pfam Nitrite and sulphite reductase 4Fe-4S domain 195 354 IPR006067 GO:0016491|GO:0020037|GO:0051536
Tpr4g1885 584 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 120 186 IPR005117 GO:0016491
Tpr4g1885 584 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 378 441 IPR005117 GO:0016491
Tpr4g1885 584 PRINTS Sirohaem Fe-binding site signature 457 475 IPR006066 GO:0016491|GO:0020037|GO:0051536
Tpr4g1885 584 PRINTS Sirohaem Fe-binding site signature 501 519 IPR006066 GO:0016491|GO:0020037|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1885 K00366 - gmx:100775519 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1885 4 19852447 19856726 Tpr4g1885 4 19852447 19856726 ECH