Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0455 ATGTTCAGATTGGCGCCAACCTTGAAAAGTAGGTACACTTCAAAATTTCTGCCACCACGTAGACGACCTATCCAATTATTTTCTGCAGCCAGAAGTTCTCCACAGTTCTCATCATATGGCCTTGGAAACCAGAATGAAGAGATTGATTTCAATTTTTTATTTGACTCCAGCACCAAAACCCCCTTTGCAAAGTGCCTTCATGCCCTTCTTGTGGTGGCGGGGAAAGTTCAAAGCATTTTTATCTCAACCCGACTTGTCAATCTTTACGCTAACCTTGGTGATGTATCCTTGTCTCGCTGCACCTTTGATCAGATCCCACAAAAGGATGTCTATGCCTGGAACTCAATGATATCTGCCTATGTTCATAATGGCCATTTCCATGAAGCCATAGGCTGTTTCTATCAGCTGTTATTGGTGTCCGAAATTCGACCTGATTTTTACACTTTTCCTCCAGTGTTGAAAGCTTGCGGAACTCTAGTTGATGGGAGGAAGATTCATTGCTGGGCTTTCAAACTGGGTTTCCAATGGAATGTATTTGTGGCTGCTTCCTTGATCCATATGTATTCTCGGTTTGGTTTTACAGGTATTGCCCGTAGCTTGTTTGATGATATGCCGTTTCGAGATATGGGTTCTTGGAATGCCATGATTTCTGGGCTCATTCAAAATGGAAATGCTGCACAGGCATTGGATGTCTTAGATGAAATGAGATTGGAGGGAATAAAGATGAATTTTGTTACAGTTGTCAGCATTCTTCCTGTCTGTCCACAATTGGGGGACATTTCAACTGCAATGCTAATCCATTTGTATGTCATAAAACATGGGTTAGAGTTTGACTTATTTGTGTCTAATGCCTTGATTAATATGTATGCTAAATTTGGTAACTTGGAGGATGCACGGAAAGCTTTTCAACAAATGTTTATAACAGATGTAGTGTCATGGAACTCAATAATTGCTGCCTATGAGCAGAATGATGATCCAGTCACTGCACATGGGTTCTTTGTCAAAATGCAACTTAATGGATTTCAGCCTGATTTATTAACACTAGTGAGTTTAGCTTCTATTGTTGCTCAGTCTAGGGATTGTAAAAATAGCAGATCTGTTCACGGATTCATCATGAGAAGGGGTTGGCTTATGGAAGATGTTGTCATTGGAAATGCAGTTGTGGACATGTATGCAAAATTGGGTCTTCTAGATTCTGCACATAAAGTTTTTGAGATAATCCCAGTTAAAGATGTGATTTCATGGAACACTTTGATAACAGGTTATGCTCAAAATGGTCTTGCAAGTGAGGCAATTGAAGTATATAAAATGATGGAAGAGTGCAAGGAGATCATACCTAATCAAGGGACTTGGGTTAGCATTCTGCCAGCTTATGCGCATGTTGGAGCCTTGCAACAAGGAATGAAAATTCATGGGCGGGTGATTAAGACCAATCTCCACTTGGATGTTTTTGTGGCTACCTGCCTCATTGATGTGTATGGAAAATGTGGAAGATTGGTTGATGCAATGTCCTTGTTCTATCAAGTGCCCCAAGAGAGTTCTGTCACTTGGAATGCCATAATATCCTGTCATGGAATTCATGGACATGCTGAGAAAACTCTAAAGCTATTTGGAGAAATGCTAGATGAGGGGGTTAAGCCTGATCATGTTACATTTGTCTCGTTATTGTCAGCTTGTAGCCATTCGGGTTTTGTTGAGGAGGGTAAATGGTGCTTTCGTCTGATGCAGGAGTATGGAATTAAGCCTAGTTTGAAGCACTATGGGTGCATGGTAGACTTGCTTGGTCGAGCTGGTTATCTAGAAATGGCATATGATTTTATAAAGGACATGCCTTTACAGCCTGATGCTTCCATCTGGGGTGCCCTTCTTGGCGCTTGTAGAATACATGGGAATATTGAGTTGGGTAAATTCGCTTCAGATCGCTTATTTGAAGTTGATTCAAAAAATGTTGGATATTATGTTCTGTTGTCAAATATTTATGCTAATGTTGGGAAATGGGAGGGAGTTGATAAAGTGAGATCACTGGCTAGAGAGAGGGGATTGAAGAAAACTCCCGGTTGGAGCACAATTGAAGTGAACCGCAAGGTTGATGTCTTTTATACTGGGAACCAATCCCATCCGAAATGCAAGGAGATATATGAGGAGTTGCGAGTTTTGACTGCCAAAATGAAGAGCCTTGGTTATATTCCAGACTATAGCTTTGTGTTGCAGGATGTCGAGGAGGACGAAAAAGAGCATATCCTCACTAGTCATAGCGAGAGATTAGCTATTGCATTTGGAATCATTAGCACCCCTCCTAAAAGTCCTATCCGGATCTTCAAGAACTTGAGGGTTTGTGGGGATTGCCACAATGCAACTAAATTCATCTCAAGGATTACCCAGAGGGAGATTGTAGTGAGGGATTCTAATCGCTTCCATCACTTCAAGGATGGAATATGTTCTTGTGGAGACTACTGGTGA 2460 0.4122 MFRLAPTLKSRYTSKFLPPRRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0455 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Vvi3g0455 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 144 IPR002885 -
Vvi3g0455 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Vvi3g0455 819 FunFam Pentatricopeptide repeat-containing protein At4g33990 166 263 - -
Vvi3g0455 819 Pfam E motif 629 691 IPR046848 -
Vvi3g0455 819 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 442 756 IPR046960 GO:0003723|GO:0009451
Vvi3g0455 819 Gene3D Tetratricopeptide repeat domain 261 379 IPR011990 GO:0005515
Vvi3g0455 819 FunFam Pentatricopeptide repeat-containing protein chloroplastic 363 465 - -
Vvi3g0455 819 FunFam Pentatricopeptide repeat-containing protein At4g14850 264 362 - -
Vvi3g0455 819 Pfam DYW family of nucleic acid deaminases 727 819 IPR032867 GO:0008270
Vvi3g0455 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat 112 135 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat 183 205 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat 311 341 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat 413 441 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat 283 305 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat 587 610 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat 487 508 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat 385 405 IPR002885 -
Vvi3g0455 819 Gene3D Tetratricopeptide repeat domain 485 741 IPR011990 GO:0005515
Vvi3g0455 819 Gene3D Tetratricopeptide repeat domain 408 474 IPR011990 GO:0005515
Vvi3g0455 819 Gene3D Tetratricopeptide repeat domain 63 161 IPR011990 GO:0005515
Vvi3g0455 819 Gene3D Tetratricopeptide repeat domain 162 260 IPR011990 GO:0005515
Vvi3g0455 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Vvi3g0455 819 FunFam Pentatricopeptide repeat-containing protein chloroplastic 487 717 - -
Vvi3g0455 819 Pfam PPR repeat family 209 251 IPR002885 -
Vvi3g0455 819 Pfam PPR repeat family 513 560 IPR002885 -
Vvi3g0455 819 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 40 165 - -
Vvi3g0455 819 NCBIfam pentatricopeptide repeat 111 145 IPR002885 -
Vvi3g0455 819 NCBIfam pentatricopeptide repeat 515 548 IPR002885 -
Vvi3g0455 819 NCBIfam pentatricopeptide repeat 311 344 IPR002885 -
Vvi3g0455 819 NCBIfam pentatricopeptide repeat 550 583 IPR002885 -
Vvi3g0455 819 NCBIfam pentatricopeptide repeat 211 243 IPR002885 -
Vvi3g0455 819 NCBIfam pentatricopeptide repeat 413 447 IPR002885 -
Vvi3g0455 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 441 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0455 Vvi-Chr3 3899244 3903031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0455 46 819 Glycoside Hydrolase AT3G49170 36.558 3.40e-166 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0455 - - vvi:100854677 1670.98